RnoEX0058786 @ rn6
Exon Skipping
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2467588-2468198:-
Coord C1 exon
chr3:2468084-2468198
Coord A exon
chr3:2467794-2467943
Coord C2 exon
chr3:2467588-2467706
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTCTCCCTTCTGTAGCCG
3' ss Score
8.93
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCTCACCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGCCTGAAGGAGCCCCGCCGTGGCCTCTGCTCCTCCTGGCTAGCATCCCTGACTCCTGGGCAAG
Seq A exon
CCGGACCTGTCCGGGTGCCTCTGTGGGTTCGGCCTGGGAGCCTAGTGTTCCCAAAAACACCAGGCACACCCATTATCATGGTGGGGCCTGGAACTGGTGTGGCCCCCTTCCGAGCAGCCATTCAAGAACGAGTGGCCCATGGGCAAATGG
Seq C2 exon
GAAACGTCTTATTCTTCGGCTGCCGCCAGCGGGATCAGGACTTCTACTGGCAGACTGAGTGGCAGGAGCTAGAGCAGAGGGGCTGCCTGACCCTGGTTACAGCCTTCTCCCGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.1=74.4)
A:
PF0017516=NAD_binding_1=PU(22.4=47.1)
C2:
PF0017516=NAD_binding_1=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCCCAGGAGGCTAC
R:
CTGCTCCCGGGAGAAGGC
Band lengths:
234-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]