MmuEX6099442 @ mm10
Exon Skipping
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25248122-25248746:-
Coord C1 exon
chr2:25248632-25248746
Coord A exon
chr2:25248336-25248485
Coord C2 exon
chr2:25248122-25248240
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATGCCATTTCCCTTCTGCAGCAG
3' ss Score
8.36
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTCATCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGTCTGAAGGAGCCCCGCCATGGTCTCTGCTCCTCCTGGCTAGCATCCCTGAATCCTGGGCAAG
Seq A exon
CAGGACCTGTCCGGGTGCCTCTGTGGGTACGTCCTGGGAGCCTCGTGTTCCCAAAAACACCAGACACACCCATTATCATGGTGGGGGCTGGAACTGGTGTGGCCCCCTTCCGAGCAGCCATTCAGGAACGAGTGGCTCATGGCCAAACTG
Seq C2 exon
GAAACTTCTTGTTCTTTGGCTGCCGCCAGCGGGATCAGGACTTCTACTGGCAGACTGAATGGCAGAAGCTAGAGCAGAAGGGCTGGCTGACCCTGGTTACAGCCTTCTCCCGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-'19-36,'19-32,20-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.1=74.4)
A:
PF0017516=NAD_binding_1=PU(22.4=47.1)
C2:
PF0017516=NAD_binding_1=FE(36.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCCCAGGAGGCTACAG
R:
CTGCTCCCGGGAGAAGGC
Band lengths:
234-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types