GgaEX6014740 @ galGal3
Exon Skipping
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1351577-1353161:+
Coord C1 exon
chr17:1351577-1351691
Coord A exon
chr17:1352330-1352476
Coord C2 exon
chr17:1353043-1353161
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCGGTCTGTTTGCTTTGCAGGTG
3' ss Score
12.02
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTCACCCTGGCCGGATCCAGATCCTCGTGGCAGTAGTGCGGTACAAGACGCGGCTCAGCAAGCCCCGCCGTGGTCTCTGCTCTACGTGGTTGGCATCTCTCAACCCAGAGCAAG
Seq A exon
GTGATGTCCGGGTACCTCTTTGGGTGAAGAAAGGAGGAATGAAGTTCCCAGCTAACCCCGACACTCCTGTGATCATGATTGGCCCTGGCACAGGGGTGGCACCTTTCCGAGCAGCTATACAGGAGCGAGTGGCACAAGGGCAGAAAG
Seq C2 exon
GGAACTGCTTGTTCTTTGGCTGCCGCCAGAAATCCAAGGACTTCTACTGCCAAGCAGAGTGGGAAGAGCTGGTGACAAAGGGCTTCCTGATGCTTTTCACGGCCTTCTCCAGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920-'11-13,'11-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.2=74.4)
A:
PF0017516=NAD_binding_1=PU(22.4=48.0)
C2:
PF0017516=NAD_binding_1=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCCTGGCCGGATC
R:
CTGGTCCCTGGAGAAGGCC
Band lengths:
234-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]