HsaEX0042222 @ hg19
Exon Skipping
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140109859-140110469:+
Coord C1 exon
chr9:140109859-140109973
Coord A exon
chr9:140110111-140110257
Coord C2 exon
chr9:140110351-140110469
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACCTCCTTCCTGCAATAGGAC
3' ss Score
8.88
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACTCACCCCTCACGGCTGCAGATCCTCGTGGCTGTAGTGCAGTTCCAGACTCGCCTCAAGGAGCCCCGCCGGGGCCTCTGCTCCTCCTGGCTGGCATCCCTGGACCCTGGGCAAG
Seq A exon
GACCTGTCCGGGTGCCCCTCTGGGTGCGGCCTGGGAGTCTGGCCTTCCCAGAGACACCAGACACACCTGTGATCATGGTGGGGCCTGGCACTGGGGTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACTG
Seq C2 exon
GAAACTTCTTGTTTTTTGGCTGCCGCTGGCGGGACCAAGACTTCTACTGGGAGGCTGAGTGGCAGGAGCTGGAGAAGCGGGACTGTCTGACCCTCATCCCTGCCTTCTCCCGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.1=74.4)
A:
PF0017516=NAD_binding_1=PU(22.4=48.0)
C2:
PF0017516=NAD_binding_1=FE(36.4=100),PF054027=PqqD=PU(14.0=30.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACCCCTCACGGCTG
R:
CTGTTCCCGGGAGAAGGCAG
Band lengths:
234-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)