BtaEX6047540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105884719-105885266:-
Coord C1 exon
chr11:105885152-105885266
Coord A exon
chr11:105884929-105885075
Coord C2 exon
chr11:105884719-105884837
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCTCACGCCATAGGAC
3' ss Score
10.15
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCCCACCCCTCGCGGCTGCAGATCCTGGTGGCCGTGGTGCAGTACCAGACCCGCCTCCGGGAGCCCCGCCGTGGCCTCTGCTCCAGCTGGCTGGCGTCCCTGGACCCTGCGCAAG
Seq A exon
GACCTGTCCGGGTGCCCCTGTGGGTGCGGTCTGGGGGCCTGACATTCCCAAAGACGCCAGATGTACCTGTGATCATGGTGGGGCCCGGCACCGGCGTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGAGTGGCCCAGGGCGAGACCG
Seq C2 exon
GAAATGTGCTGTTCTTCGGATGCCGCCGGCGGGACCAGGACTTCTACTGGGAGGCCGAGTGGGAGCAGCTGCAGGCGAGAGGCTGCCTGACTCTGGTCACGGCCTTCTCCCGGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-'15-21,'15-19,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.1=74.4)
A:
PF0017516=NAD_binding_1=PU(22.4=48.0)
C2:
PF0017516=NAD_binding_1=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCGGCTGCAGATCCT
R:
CTGCTCCCGGGAGAAGGC
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]