DreEX6011748 @ danRer10
Exon Skipping
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31895886-31896832:+
Coord C1 exon
chr5:31895886-31896000
Coord A exon
chr5:31896134-31896280
Coord C2 exon
chr5:31896714-31896832
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTAAATATGGTTTAGGAG
3' ss Score
5.54
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAACACCCTAATCGTATCCAGATCTTGCTTGCTGTGGTGAAGTATAAAACTATGCTCGTAAAGCCACGCAAAGGTCTCTGCTCTTCTTGGCTGGCGTCTCTGGACCCGTCTAAAG
Seq A exon
GAGATGTTTACGTACCACTGTGGGTGAAGAAAGGCAGTTTAAAATTCCCACAGGACCCAGAAAGCCCTGTGATCATGGTGGGACCAGGAACTGGAGTGGCTCCCTTCAGATCTGCCATACAGGAGAGGGTTGCTCAGGGGAAGATGG
Seq C2 exon
CTAATGTGCTATTCTTTGGCTGTCGATCTGAATCTAAAGACTTCTACTGTGGATCAGAATGGCAGGAGAAGGTGCAGGCGGGACAAATGATACTCGTCACAGCCTTTTCCAGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429-'17-16,'17-13,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.2=74.4)
A:
PF0017516=NAD_binding_1=PU(22.4=48.0)
C2:
PF0017516=NAD_binding_1=FE(36.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACCCTAATCGTATCCAGA
R:
CTGATCTCTGGAAAAGGCTGTGA
Band lengths:
234-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]