MmuINT0106851 @ mm10
Intron Retention
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25248336-25248746:-
Coord C1 exon
chr2:25248632-25248746
Coord A exon
chr2:25248486-25248631
Coord C2 exon
chr2:25248336-25248485
Length
146 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATGCCATTTCCCTTCTGCAGCAG
3' ss Score
8.36
Exon sequences
Seq C1 exon
GCTCATCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTACCAGACTCGTCTGAAGGAGCCCCGCCATGGTCTCTGCTCCTCCTGGCTAGCATCCCTGAATCCTGGGCAAG
Seq A exon
GTAAATCCATAGTTCTGGGGCTCGGGGTTGGGAGAGAGTATAGCCTCAAGTGCCCATCTTCCCCTGTTCCTGCTACCCCAGGAGCTCAAGCACTTAGCACCTTAGCACTGTCTTTTGACCTCCTACATGCCATTTCCCTTCTGCAG
Seq C2 exon
CAGGACCTGTCCGGGTGCCTCTGTGGGTACGTCCTGGGAGCCTCGTGTTCCCAAAAACACCAGACACACCCATTATCATGGTGGGGGCTGGAACTGGTGTGGCCCCCTTCCGAGCAGCCATTCAGGAACGAGTGGCTCATGGCCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471:ENSMUST00000114349:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.1=74.4)
A:
NA
C2:
PF0017516=NAD_binding_1=PU(22.4=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGAGGCTACAGATCCTT
R:
GAGCCACTCGTTCCTGAATGG
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types