HsaINT1024648 @ hg38
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr9:137215407-137215805:+
Coord C1 exon
chr9:137215407-137215521
Coord A exon
chr9:137215522-137215658
Coord C2 exon
chr9:137215659-137215805
Length
137 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
CCACCTCCTTCCTGCAATAGGAC
3' ss Score
8.88
Exon sequences
Seq C1 exon
ACTCACCCCTCACGGCTGCAGATCCTCGTGGCTGTAGTGCAGTTCCAGACTCGCCTCAAGGAGCCCCGCCGGGGCCTCTGCTCCTCCTGGCTGGCATCCCTGGACCCTGGGCAAG
Seq A exon
GTGACCCCTGCTCCCAGGGTGGGGGCCGTGGGCCCATATCCCCTTCTCTCCCATGCTCATGCAAATGCTGGGCTAGGGCCCCAGCAGACTCAGCACAGGTCTTTGATCCTCTTCATGCCACCTCCTTCCTGCAATAG
Seq C2 exon
GACCTGTCCGGGTGCCCCTCTGGGTGCGGCCTGGGAGTCTGGCCTTCCCAGAGACACCAGACACACCTGTGATCATGGTGGGGCCTGGCACTGGGGTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566:ENST00000344894:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PD(13.1=74.4)
A:
NA
C2:
PF0017516=NAD_binding_1=PU(22.4=48.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACCCCTCACGGCTG
R:
ACACGCTCCTGGATGGCT
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains