GgaINT0126550 @ galGal3
Intron Retention
Gene
ENSGALG00000004645 | TBC1D13
Description
NA
Coordinates
chr17:5893805-5894089:+
Coord C1 exon
chr17:5893805-5893914
Coord A exon
chr17:5893915-5894015
Coord C2 exon
chr17:5894016-5894089
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CGGCCGCCGCTTCCCCTCAGGAT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GATGGCGGAGGGGGCGGGGCTCGGCGCCCCCCGCGGGCGCGGCGTTTCCAGCCGGAGCGGTTGCGCGGCGCGCGGGGTCGGGCCGCCATGTCGCGGTTGCACCGGAGCAG
Seq A exon
GTGGGTGCGGGGCCGGAGGGGGTGCGGGGCGCCGTCCGCCGCTCGCTCGCTCGCTTACTTACTCACTCACTCACTCACTCACGGCCGCCGCTTCCCCTCAG
Seq C2 exon
GATCGCGGATTTCCAGGAGGTGCTCGGCGAACCTACGGTGGCTCTGGACAAGCTTCGCGATCTCTGCTTCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645:ENSGALT00000007398:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTCGCGGTTGCACC
R:
GCTGAAGCAGAGATCGCGAAG
Band lengths:
98-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]