BtaINT0145408 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012480 | TBC1D13
Description
Bos taurus TBC1 domain family, member 13 (TBC1D13), mRNA. [Source:RefSeq mRNA;Acc:NM_001206715]
Coordinates
chr11:99298021-99299121:+
Coord C1 exon
chr11:99298021-99298043
Coord A exon
chr11:99298044-99299047
Coord C2 exon
chr11:99299048-99299121
Length
1004 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CTCTGTCTCCCTCCTTCTAGGAT
3' ss Score
13.28
Exon sequences
Seq C1 exon
ATGTCGAGTCTGCACAAGAGCCG
Seq A exon
GTGAGGAGCCACCAGGGCCGACCAGCCAGGCCACTGCTGGCCATGCTGTCCCTTTTGACCTGCAGGGGTGGAGGTGGGGCGAGCGAATGTGGCTAGGAATCGGGACTTCCCCCCTCGCCGCCCCCCCACCCCTCCGCGGGCTGAAGGTTTTGGGCGCCCACTTTCCAGCCTCTTTGCTGTGGGCCTGAGCGGGGGCACGGAACGGGGACATCTCTCCTGCCCCTCGGTGCTGCCGCTTCTCTCTCTGTCTCCCCCGCACCCTGGATCCTTTCCCCTGGTGTCTTCCTCTTCTAGGGCCTTGATGCCCGATCCCAATGCACCCCCCACCCTTTTTCTCTACCTTGTTAATCCTTTGCCCCAGTAACCTCCTCTATCCAAATGCTTCCCCTTCCACGTACCCTTTTCTTACTAGAAATGCTAGAAAACGTAGATTCTCCAGTCTCTTCCCCCCACCCCCATCCCCGGGGCCAAATCCTGCAGCTTTGGCTAATTTTGCTCATTCTTCAGTTTTCCTCCAGTTTTTAAACCTTTTGTCCTTGCCTGCCCCGCAGGCTCAGAGGTCTTCTAATGGTTTTATTTTTGAGCTTGGGATGCTGGGTGCAGAGTGCACATGTCCTTGTCCACAGATCAGATTACTCCTGATTCTAAGGGTTTTTGGAGTTCAGATAGAGACAGTGTGGTTTGGACCTGGCCAGCAGGAAGTGGCCAGTAAATGCAGGCTCAGTAAATGTTAGAATGTGTCTGATTTCATGGTGCTCATTTGAGAATCTTCAGACAGGAGTATCCTATAGATTTCTGGACTTAAGAGGAAAAAGTGATCTGTAGTTCTTCAAAGCTGCCCTTTAGCCAGGGTTTTGCCTGTGTTTGGCATCTTTGTGTCCTGAGGGGTAGGGAGGAACAGGTTGGAGACTGGGGGTGTAAGGGAGCTGTGGGCTTTAGGAGGGGTCGCTAAGCCTGTCATCTTGGGGTTTGTGGGTCATTTCCCTCTGTCTCCCTCCTTCTAG
Seq C2 exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCACAATTGCCTTGGAAAAGCTTCGGGAACTCAGTTTTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012480:ENSBTAT00000016559:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development