RnoINT0147923 @ rn6
Intron Retention
Gene
ENSRNOG00000015970 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:RGD Symbol;Acc:1591937]
Coordinates
chr3:8701855-8702904:+
Coord C1 exon
chr3:8701855-8701977
Coord A exon
chr3:8701978-8702830
Coord C2 exon
chr3:8702831-8702904
Length
853 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
TTCCTTTTCTGCCCTTGAAGGAT
3' ss Score
8.91
Exon sequences
Seq C1 exon
CCGGAGGCTTTTGCCCAGCGTCCCGGTGTTCCCCGAGGGAGGGGGGCGGTGGTGGCAGCTGGGGCTGCAGTTGCAGCCCAGGGGTCCGGAAGTCAACACCATGTCGAGTCTGCACAAGAGCCG
Seq A exon
GTAAGGAGACCCGAGGTCAAGACTGCACCCAGACCGCTCCGGCCAAGCCGGGCCTTCTCACCGACAGAGCTGCTCAGCGCATGTGCGGCCAAGAATAGCCCCCTCCTCTGGCGGCGGGCCCCCAGAGCCCACCTTACGGTCTCATTGCCTGTGTGGCAGAGGCGAGAAGCAGAGGTGCTTCTCTTACCTTAGTGTCCCCTTTCTTTCTTACTCCGGACTCGTCCACCCCTCTATTGCTCTCTCCGCTTCTTCGCTCCATGATCCGCACCCCCTTTCTTTCCCCCAAAATGCCCCTGTCCCTGTGCCCCTTGCCCGTCAGAAACACCAGAGAACTCAGATTCTCCAGTCTGGCTTCTTAAATCCACCTCCTACCCCCACCCCTGGCTACATCTTGCAGCGTCCGCTAAATTTTGGTCACTCCAGGACTAATTTTTCGTCTTTTGTCTTTGCCTGAGGGCAGGCCCCAGCAGTCTGCGCCCCCTCCCCCTTACCCAGCCAAGAGCTGTGGGAGCAGTGGGGAGGTTGTACAAGTCTGTGGATCAAATTACTCCTGGTTGCTCGAAGCTTGTTGTATGAATTCTGGTAGTGGTGTGCTGTGGGCTGGGCTTGGCCACAGCAAGTGCCCAAGAAATGCCAGCTCACTAGCAGTGGAAGGTGCTTAATGTTAAATTCTCACTTCAAACCCTTTTGATTAGAATACTGGTTCTTCGTTGGCATGGCAGTTTTAGAGGAGGAAACTTGTATTGCCCACTTCCCTAAGCTGGTAGTTGGAGACAGTTGAGGGTAAAGGATCTTTGGGCTGCAAGACTGATCATTAAGTCTTACTTTGGAGTTTCCTTTTCTGCCCTTGAAG
Seq C2 exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGGAAAAGCTTCGAGAACTCAGTTTTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015970:ENSRNOT00000021431:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCCCAGCGTCCCG
R:
CACTAAAACTGAGTTCTCGAAGCT
Band lengths:
190-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]