RnoEX0088798 @ rn6
Exon Skipping
Gene
ENSRNOG00000015970 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:RGD Symbol;Acc:1591937]
Coordinates
chr3:8701855-8705058:+
Coord C1 exon
chr3:8701855-8701977
Coord A exon
chr3:8702831-8702904
Coord C2 exon
chr3:8704997-8705058
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTGCCCTTGAAGGAT
3' ss Score
8.91
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CCGGAGGCTTTTGCCCAGCGTCCCGGTGTTCCCCGAGGGAGGGGGGCGGTGGTGGCAGCTGGGGCTGCAGTTGCAGCCCAGGGGTCCGGAAGTCAACACCATGTCGAGTCTGCACAAGAGCCG
Seq A exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGGAAAAGCTTCGAGAACTCAGTTTTAGTG
Seq C2 exon
ATCCTCCTGAACTACCTCCCTTTGGAGAGAGACTCGTGGGATTCCATCCTGGCCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015970_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCCCAGCGTCCCG
R:
CTGCTTGGCCAGGATGGAATC
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]