BtaEX0035693 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012480 | TBC1D13
Description
Bos taurus TBC1 domain family, member 13 (TBC1D13), mRNA. [Source:RefSeq mRNA;Acc:NM_001206715]
Coordinates
chr11:99298021-99301544:+
Coord C1 exon
chr11:99298021-99298043
Coord A exon
chr11:99299048-99299121
Coord C2 exon
chr11:99301483-99301544
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTCCCTCCTTCTAGGAT
3' ss Score
13.28
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATGTCGAGTCTGCACAAGAGCCG
Seq A exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCACAATTGCCTTGGAAAAGCTTCGGGAACTCAGTTTTAGTG
Seq C2 exon
ATTCTCTTGAACTACCTCCCCTTGGAGAGAGCCTCATGGACCTCCATCCTGGCCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012480_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCGAGTCTGCACAAGAGC
R:
CTCTGCTTGGCCAGGATGGAG
Band lengths:
85-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development