MmuEX6100205 @ mm9
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:29989266-29992233:+
Coord C1 exon
chr2:29989266-29989432
Coord A exon
chr2:29990317-29990390
Coord C2 exon
chr2:29992193-29992233
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTGCCCTTGAAGGAT
3' ss Score
8.91
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCCCCCGCGGAACGCGCACGCTCCAAGTTCTGCTTCCTGCCGGAGGCTTTTGCCCAGCGCCCCGTGTCCCCGGAGGGAGGGGGGCGGTGGCGGTGGCGGCAGCTGGGGCTGCAGAAGCAGCTCGGGAGTCCGGAAGTCAACACCATGTCGAGTCTGCACAAGAGCCG
Seq A exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGGAAAAGCTTCGAGAACTCAGTTTTAGTG
Seq C2 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678-'0-5,'0-0,2-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGTTCTGCTTCCTGCC
R:
AGCAGAGGCACCGCAGTC
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: