GgaEX6015127 @ galGal3
Exon Skipping
Gene
ENSGALG00000004645 | TBC1D13
Description
NA
Coordinates
chr17:5893805-5894361:+
Coord C1 exon
chr17:5893805-5893914
Coord A exon
chr17:5894016-5894089
Coord C2 exon
chr17:5894321-5894361
Length
74 bp
Sequences
Splice sites
3' ss Seq
CGGCCGCCGCTTCCCCTCAGGAT
3' ss Score
8.83
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GATGGCGGAGGGGGCGGGGCTCGGCGCCCCCCGCGGGCGCGGCGTTTCCAGCCGGAGCGGTTGCGCGGCGCGCGGGGTCGGGCCGCCATGTCGCGGTTGCACCGGAGCAG
Seq A exon
GATCGCGGATTTCCAGGAGGTGCTCGGCGAACCTACGGTGGCTCTGGACAAGCTTCGCGATCTCTGCTTCAGCG
Seq C2 exon
GAATCCCGTTTGACGGAGGGCTGCGCTGCCTCTGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTCGCGGTTGCACC
R:
CTTCCAGCAGAGGCAGCG
Band lengths:
66-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]