MmuEX6100205 @ mm10
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:30133746-30136713:+
Coord C1 exon
chr2:30133746-30133912
Coord A exon
chr2:30134797-30134870
Coord C2 exon
chr2:30136673-30136713
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTGCCCTTGAAGGAT
3' ss Score
8.91
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCCCCCGCGGAACGCGCACGCTCCAAGTTCTGCTTCCTGCCGGAGGCTTTTGCCCAGCGCCCCGTGTCCCCGGAGGGAGGGGGGCGGTGGCGGTGGCGGCAGCTGGGGCTGCAGAAGCAGCTCGGGAGTCCGGAAGTCAACACCATGTCGAGTCTGCACAAGAGCCG
Seq A exon
GATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGGAAAAGCTTCGAGAACTCAGTTTTAGTG
Seq C2 exon
GCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678-'0-8,'0-0,2-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGTTCTGCTTCCTGCC
R:
AGCAGAGGCACCGCAGTC
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types