HsaINT0163986 @ hg38
Intron Retention
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr9:128787349-128788407:+
Coord C1 exon
chr9:128787349-128787376
Coord A exon
chr9:128787377-128788333
Coord C2 exon
chr9:128788334-128788407
Length
957 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CGCCCTATCTCCCCTTCCAGAAT
3' ss Score
11.03
Exon sequences
Seq C1 exon
ACACCATGTCAAGTCTGCACAAGAGCCG
Seq A exon
GTAAGGGGCCATGGGGCCTGACCCGGCTGGGCCACTCCTGGCCAGGCTGCCCCTTCTGCCCCTCAGAAGGGGGAAGCGCGGGTGTGGCCAGGAATCGGCAGACCCCCTCGGCAGAGGGTCTCGAGCGTCCACCTTCTAACCTCATTGCCTGTGGGCTGCAGGAACGACGGAGGGGCGGCCCTTCTCCTGCCCCTGATGTCACTGCTTCTGCCTCCCTCATCCTGGACCCCTGGTGTCCCCCTTCCCCTGAGTCTTCCTCATCCAGACCCCCATGCCCCGCCCCCGTGCCTTTCCCCCTTTTGATCCCCCTGCTCCCGTACTCTCTCCAAGTGCACCCTGTCCCCCGTGCCTTTTTCTTACTAGGATTGCTAGAGAACTTGCATTCTCCAGTCTGGCCCCTCCCCCAGGCCAGATCCTGCAGCATTGGCTGAATTTTGCTCACTCTTCAGTTTTCCTTCAGGACGTGTTTTTTAAACCCTTTGTCCTTGCCTTCTGGCAGGCCCAGAGGTCTTGTAATGGTTATATTTGTGAGCATGGTCCATTGTCTGCATATCAAATTACTCCTGGTTCCTGAGGTCCAAGGAGTTCAGTTGGTGGCTGTGCGTGGACCCGGCCTGGCCGGCAGGAAGTGCCCAGTAAATGTCAGCTCACTAAGTATTAGAATGTTGGAATATGTCTAATTTTATGGTCCTCATTTGGGAACTTCTAGACAAGAATATCTCTCAAGTTTCTTCCCTGGCATTCTGTGTTTCTGGTTGTAGAGGAAGAAGTGAAATATAGTTTTGTTGTTCTCCAAAGCTGTCTTTGGTGAGGACCTTGACTAAGCTGTGTGATTTTTATGTCCTAAAGGGGAGAGAGGCACAGGTTGGAAACTGGCAGTGTGAGGGAGCTGAGGGCTGTGGGTCTCACTGAGCCGATATCAGCATGCTTCATTTGCCGCCCTATCTCCCCTTCCAG
Seq C2 exon
AATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCAATTGCATTGGAAAAGCTGCGGGAACTCAGCTTTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021:ENST00000223865:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains