HsaINT0163986 @ hg19
Intron Retention
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131549510-131550686:+
Coord C1 exon
chr9:131549510-131549655
Coord A exon
chr9:131549656-131550612
Coord C2 exon
chr9:131550613-131550686
Length
957 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CGCCCTATCTCCCCTTCCAGAAT
3' ss Score
11.03
Exon sequences
Seq C1 exon
GTGTTTCCCGCCGGAGGCTTTTGCGCAGAGCCCCGCGTCCCTGGGGGGCGGCGGCGGCGGCGGCAGCGCAGGCGGCAGAGGCGCAGGCGGCGGAGGCGGCTGGGGGGTCCGGAAGTCAACACCATGTCAAGTCTGCACAAGAGCCG
Seq A exon
GTAAGGGGCCATGGGGCCTGACCCGGCTGGGCCACTCCTGGCCAGGCTGCCCCTTCTGCCCCTCAGAAGGGGGAAGCGCGGGTGTGGCCAGGAATCGGCAGACCCCCTCGGCAGAGGGTCTCGAGCGTCCACCTTCTAACCTCATTGCCTGTGGGCTGCAGGAACGACGGAGGGGCGGCCCTTCTCCTGCCCCTGATGTCACTGCTTCTGCCTCCCTCATCCTGGACCCCTGGTGTCCCCCTTCCCCTGAGTCTTCCTCATCCAGACCCCCATGCCCCGCCCCCGTGCCTTTCCCCCTTTTGATCCCCCTGCTCCCGTACTCTCTCCAAGTGCACCCTGTCCCCCGTGCCTTTTTCTTACTAGGATTGCTAGAGAACTTGCATTCTCCAGTCTGGCCCCTCCCCCAGGCCAGATCCTGCAGCATTGGCTGAATTTTGCTCACTCTTCAGTTTTCCTTCAGGACGTGTTTTTTAAACCCTTTGTCCTTGCCTTCTGGCAGGCCCAGAGGTCTTGTAATGGTTATATTTGTGAGCATGGTCCATTGTCTGCATATCAAATTACTCCTGGTTCCTGAGGTCCAAGGAGTTCAGTTGGTGGCTGTGCGTGGACCCGGCCTGGCCGGCAGGAAGTGCCCAGTAAATGTCAGCTCACTAAGTATTAGAATGTTGGAATATGTCTAATTTTATGGTCCTCATTTGGGAACTTCTAGACAAGAATATCTCTCAAGTTTCTTCCCTGGCATTCTGTGTTTCTGGTTGTAGAGGAAGAAGTGAAATATAGTTTTGTTGTTCTCCAAAGCTGTCTTTGGTGAGGACCTTGACTAAGCTGTGTGATTTTTATGTCCTAAAGGGGAGAGAGGCACAGGTTGGAAACTGGCAGTGTGAGGGAGCTGAGGGCTGTGGGTCTCACTGAGCCGATATCAGCATGCTTCATTTGCCGCCCTATCTCCCCTTCCAG
Seq C2 exon
AATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCAATTGCATTGGAAAAGCTGCGGGAACTCAGCTTTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-TBC1D13:NM_018201:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGGCTTTTGCGCAG
R:
CACTAAAGCTGAGTTCCCGCA
Band lengths:
210-1167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)