GgaINT0126556 @ galGal3
Intron Retention
Gene
ENSGALG00000004645 | TBC1D13
Description
NA
Coordinates
chr17:5896569-5897489:+
Coord C1 exon
chr17:5896569-5896728
Coord A exon
chr17:5896729-5897281
Coord C2 exon
chr17:5897282-5897489
Length
553 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGG
5' ss Score
4.51
3' ss Seq
AGTCTTGCCTTGCTCTTCAGGTG
3' ss Score
8.45
Exon sequences
Seq C1 exon
GAGGCTGTACCCCGACATGGCATTCTTCCAGCGCCCGACCGACTACCCCTGCCTTCTAATCCTGGACCCCCAAAATGAGTTTGAGACGCTGCGTAAGCGGGTGGAGCAGACCACGCTGAAGTCCCAGACGGTGGCACGGAACCGCAGCGGGGTTACAAAT
Seq A exon
GTGAGGTCCAGGTGTGGGCTGCCCGTGGGGCATGGAGTGGGCCCTGATAGGGCTGCTGGTGGTTCTCGGGCTTTTTGTGCTTGTGTGTTGGAATTGTGTGAATGCAGCAGCAGAGGCTGTGAATTTGGTGGCTAGACAGCTTTAGAGAACCAGCTGGCGTGCCTGAGAGCTGGCAGGAGCCGTAGGATATTTTATGCCTAAGATGTGCCTTCCTGCACGGGAACAAAGCACTGAAGGGTTAATTTACTGAAGCTGAATTGATAGAGTCTTCCAGAGCTGGGTCTCCTCATAACTGTGATTGGGAAAAGAGCTGGGGAACGGCTGGAACGTGTGTTATCTTTTTCCTCTGTGGGTGTCGGATCATTAAGTGCTGCACGCTGGGTGCTGGGGAAGGTGGCTGGCTGCAGTCTGTCCCCTTTTCCTGCGTTACAAAGACGTGGCACTGCTGTGTTTTCTTACTGCATGGGATCAGGTGATGCAGTGGTTCAGGGGAACTGTCCGTTGCAGCACAAACTGCTTTGTTCATCAGCTCTAGTCTTGCCTTGCTCTTCAG
Seq C2 exon
GTGAGCTCCCCTCTTAAATCATCTCCTTCCTCTCTGAGTGAGTACGAAGTTCTGCCCAATGGCTGCGAAGCTCACTGGGAAGTGGTGGAGCGAATCCTTTTCATCTATGCCAAGCTGAACCCCGGGATAGCCTACGTTCAGGGGATGAATGAAATAGTGGGGCCCCTTTACTACACCTTTGCTACAGATCCTAACAGCGAGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645:ENSGALT00000007398:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(29.3=68.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACATGGCATTCTTCCAG
R:
TCCACTCGCTGTTAGGATCTGT
Band lengths:
355-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]