MmuINT0157264 @ mm10
Intron Retention
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:30142262-30146862:+
Coord C1 exon
chr2:30142262-30142421
Coord A exon
chr2:30142422-30146651
Coord C2 exon
chr2:30146652-30146862
Length
4230 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
AGGCTCTCCCTTCTCTCCAGATG
3' ss Score
8.77
Exon sequences
Seq C1 exon
GAGGTTGTGCCCAGATATATCTTTCTTCCAAAGAGCCACTGAGTACCCCTGCCTGCTCATCCTGGACCCGCAAAATGAGTTTGAGACCCTTCGTAAGCGGGTGGAGCAGACGACACTGAAGTCTCAGACGGTGGCCAGGAATCGAAGCGGGGTTACAAAT
Seq A exon
GTAAGAGCCAGTTGGGGATCTGAGATAGTTTTCTTTTTTAAGATTTATTTATTCTGTTTGAATGTTTGCCTGTGTGTGTGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCACTGTGTACATGTCTAGTGCCTATAGAGGTCAAAAAAGGCATCAGATCTCCTGGAACTGGAGTCATGGATGGTTGTGAGTGCTGTGCTGGGAATCGAACTCTGGTCCTGTACAAGAACAAGTGCTCTTTCCTGTTGAGCCATCTTTCCAGCTCCCTGCGGTCTTGTCTCCCCCCTCCCCCCTTTAAGATTTATTTATTTGTGAGTATTCTATCTGCTTGTTTGCCTGCATGCCAGAAGAGGGCATCAGATTTTATTATACATAGTTGTAAGCTACCTTGTCCTTGCTGGGAATTGAACTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTACCCACTGAGCCATCCATCTCTCTCCAGCCCATGGGGCTTTTCCTGACAGGCTGTCCCTTCCTGTCTCCTTTGGTGCACTGGCCACAGGGCACTGGGTGCTTTCTGAAGGTTGCTGTCAGAGGCCTTTTGTTGTAGTTCCAGCCGGGCATGAGAGCTACAGGCCAGGCACTGTCCTCATCTCAGGCGCTTCTGCTAGAGGTAGAGTGGAGACAGTCCTGAGGGATGTCCCATTGTGGTGCGAGCAGCAGTGGGACAGCTAGCCATCCATCCAGGTGTGGGCCTCAGCGGCTGCAGCGGATCTAGACAGCAGGAGGTGAAGGACAGAGCAGAAGAGCTGCCTGAGTATTATGGAAGGCATGTGCCAAGTCCTCAGATACGAGAGAGTGAGTGCCAAATGTTCCAGAGTGGGGCTGGGCTAGTGATTCTGCTGCAGAGACAAAAGCTCTCTGACTGAGCCTCCAGTGACCACTGGGCCTCCTCCTTTTCCAACAGGCCATCCCGTTACCCACCATGCTGCACATGTGCCACCATGCCCCTCCTGGACACCCTGGAGGAAGTCACTCACAAAAATGCTGGGCTGTGGTAGACCATGCATTTAGTCCCAACATTTGGAGGGCAGAGGCAAGCAGATCTCTGAATTTCATACCAGCCTGATCTACAGAATGAGTTCTAGGACATCCAGAGAAACCTCGTCTCAAAAAACAAAACTTTGCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTTGAGAAACAGAGGCAGGCAGATTTCTGAGTTCGAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGAAAAACCAAAACCAAAAAATGAAAAACAAAAAAAACAACCAAAACCAAAATCTATTATTGTACAAGGGATCTGGATAGGAAGTAGAGATATAGCAGGCCTGCTCTGCCCTGATTAACGTCCTGTGCCCATTCTGATGGCCATGAATGTGCCAAAGGTGCCATTACCGCATCAGGGTTTCTCCAGTGTTCCCCGACAGCTTCCAACCCCACACTTCAATCCTGAGACAGGGGGAGGTTCCAAACAGCGCCCTGGCCACCATAGCACAACTCATGACAAAGTCCATCCTCACACAGCAGGAGCAGCCAGGCTAGGACTGTCTGTAGGGACATAGCCACTGGCATCTCCTTCACCACCATATCACTCAGCTCAACATCTCACAACAAAAGCTTAATTTATCATTTGTATCATGGAAAAAAAAAAAAAGAGGGCCCCTTTGGCTAGAAGCAGTGAGATGTGAGGGAAGGTGCTGTTGAGCTCCAAGATCTAGCAGATCCTGCCACTTGTGGCAGATGGTATGCACCCCATCTCCACTCCCCAAAATGAGGTGTATGACCTTATTTCTACATGAAAACCCATTGCTCTGGGACCTGTAGCAGTGACTTGTTCCCACATGTCACTGGCTTTCTTCAATGGGAAGGCCCTGCTCTGAAGCCTCCCCAGCAGGGAATGGAGGACTGCACAGATCTCTCTGAGTTGCTACCATCAGAGCAGTATCAGAGCAGGTACCATCTCTCCTGGTCCCATGCACCTGCTGCAGGGTTGGGATTCACAGGAGTTGTGCAGAGCGTTGGCTTGGTGAAGGAACCGTGGCTCACTTGTGCATCTGTCTTGCGTGGATGCTGGATAAAGGCCCAGCTCTATTGATTCTTTTGCTGTAGCTTTGTATATGAGGGTCAGACTCTTCCCATTTTACCTTTGGAACTGGTCTCACAGTCCAGGATCCACCCAAGCTTCATCCCTGGGACTCTAGACCTGTGGTAGGGTGACCTTCTGTGTGACTCTGGTCTTTTTCCTCTCTGTAATCTGGATATGATCATTTCTGTGGAACTGCAGGAGGAAATGAGGTCACGGAAAGTAGGTTCTTGGAAAGCTGGGAGCACTGGGCCTTCCTGGGAGACATCCTGCTCCAGTGGCTTGGCCAAAGTCTTTGAGCTAGCCAGTCCAGGCTCAGGTCTATGTGAGCCTCAGTTTTCTCCTCTTGAAATATTCAAAGGTAGTGTCATGGCTCTAAGCCTGTAATGTGAGGTAGGAGGATCAGCTCAGGGTCACCCTCAGCTGTATGACGAGTTTGAAGTCCAGCTTGGGCTATGCCCAACTCTGTTTAAAGAAGAAAAGAAAAAAGAAAAGAAAAGAAAAGAAAAAGAAGATGGCTTTGAGAAGTGTGTAGGACTGTTGGAGGAGTGTGGTCTGCTCCTGAGGCGCGTGTGTTTCTGTCTTATATGTGTGCTGTGAATGTGGAGGTAGCTCGGACTCCCTGTCCTCTGTTCTAAGACTCACAGTCTCTGTGGGGGTGTCCCCTGCAGTCCCCCAGCTCTGTAGCCACTGCTGGCACAGGCCAGGGACAGCTGAGGCATCAGAATCCCCTGAGTTTTCTGAGATTCTACAGAGCAGCAGAGGTTTCGGACCCTTCTCTTGTTTTCAGCTGGTTTTTGTGTCGTCCAGGTTGGCCTAGAACTCTCATACATAGCTGAGGCTGGTTTTGAACTCCTGAGACTCCGGCTTCTGCCTCCCAGTGCTGGGATTTACGGGTCTGCACCACTACATACAGCCAAGTCTTTATTCTCGTTACAACTGAAGTTTGTTTCCAAATGAAGTTTGTTTTGTTTTGTTTTGTTAAAGATTTATTTATTTTATGTATATGAGTACACTGAGCTGTACAGATGGCTGTGAGCCTTCGTGTGGTTGTTGGGAATTGAATTTTTAGGACTTCTGCTCAATCCGGTCAACTCTGCTTGCTCAGTCCCTGCTTGCTCCAGCCCAAAGATTTATTTATTTATTTTTCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCCCCCATTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCAAGATTTATTATTATACATAGGTACACTGTAGCTGACTTGAGATGCACCAAAAGAGAGCATCAAATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTTCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCACCAGCCCCACAACTGAAGTTAAAAAAAAAAGCCCAAAAAACAGAAAACCATACATTTTATGTATATAGCTAGATATGCTAAATATATACATGCATGTGTATAAGTTACACCTGTGCGTAACCACCCGTCTAGTGTAGAATTTCTCACTGCAGGAAGTTCTTTCTCTCCCTTCCTCCACCTCTGTTTATTTTGCTTTTGTTTTTCAAGACGGTTTTTCTATACAACCTCTCTGGCTGTCCTGGAACTCTCTCTGTAGACCAGGCAGGTATCAAACTCCGAGATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGATGGGCACCGTCACCACCCGGTATAACCTCTATTTTGTTGTTTGGTTGGTTTAGTTTGGTTTGATTTTAAGATAGCCTTGGCTGGCCTCAGACTCTCAGAGTTCTGCTTGCCTCTGCTTCTCAAGTACTGGGACAGCAGGAACTGTGTTCTATCATGTCTGTTGTGACCTCTGCTTTTAGCCTAGTGTAACTGGAAATCTCCTCCTGCTCCACTGGCCTGCCTGTTCCTTGGGCTGGACATGTTCCTCCTGCCCTTTCTTGCCCATAAGCTAGGATACTGTCAAGCTGGGCTTACCGGAAACAATTGTCCTGCTAACAGGCTCTCCCTTCTCTCCAG
Seq C2 exon
ATGAGCTCCCCGCACAAGAACAGTGCGCCATCAGCCCTGAACGAGTATGAGGTGCTACCCAATGGCTGCGAAGCCCACTGGGAGGTGGTGGAGCGCATCCTGTTCATCTATGCCAAGCTCAACCCTGGCATCGCTTACGTGCAGGGCATGAATGAGATCGTGGGCCCCCTCTACTACACTTTTGCCACTGACCCTAACAGCGAGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678:ENSMUST00000044556:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(29.3=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types