HsaINT0163994 @ hg38
Intron Retention
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr9:128797055-128806019:+
Coord C1 exon
chr9:128797055-128797214
Coord A exon
chr9:128797215-128805858
Coord C2 exon
chr9:128805859-128806019
Length
8644 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCCCCACGCTGTCTCCCCAGCAA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GAGGTTGTGCCCAGACATTTCCTTCTTCCAGAGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCAGAATGAGTTTGAAACCCTTCGTAAGAGAGTGGAACAGACAACACTGAAATCTCAGACGGTGGCCCGGAACCGGAGTGGGGTCACAAAT
Seq A exon
GTGAGTGCCAACCTGGGGTCCCCAGGGACTCCCCCAACAGTATTTTCTTTCCTTTTTCTCTTAAACTCCTGGCCACAAGGTGTCGGGCCATGACCATCTGCTTGACAGTTACTCAGCGCAATCCTGATGCTGCCAGATCCTGGGGTGCTTTCTAAAAGTTGGGTAACAGAGGTTCACTGTGTCCCATCTGGGTGTAATGGCTGCTGGGAAGGGCCCTGCATCACAGTGAGTGAATGAGCCAGGCTTCTAATCTTATAGTGGGGATGGCTCTGAGAAGGTCATTACAAATGTGAGAAAATGTGATAGGGCTGGGCACAGTGGTTCACGCCTGTAATCCCAGCGCTTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCTACATGGTGAAACCCTGTCTTTACAAAAAATACAAAAATTAGCTGGGCATGATGGCATGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTAGGAGGATGGTTTGAGCCTGGGAGGCAGAGGTTGCAGTGAGCCTACATCACACTACTGCCCTCCAGCGTGGGTGACAGAGCCAGACCCTGTCTCAAAAAAATAAAAATTAAGAAAACGGCCAGGCACAATGGCCCATGCCTGTAATCCCAGCACTTTGGCAGGCCAAGACAGGCAGATCACTTAAGGCCAGCAGTTCAAGACCAGCCTGACTAACCCGGGGATTTAACCCCATCTGTACTGAAAATACAAAAATTTGGCCCTGGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGTGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACTAGCCTGGCCAACATGGTGAAACCTTGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACCCGGGAGGCTTAGGCAGTAGAATTGCTCGAACCCGGGAGGTGGAGGTTGCAGTGAGTCTAGATTATACCACTGCATTCCAGCCTGGGTGACAAAACGAGACCCTGTCAAAAAAAAAAAGAAAAGAAGAGAACATTCCAGGTGGAGAGGAGGGCATATGCCGAAGTCCTCAGCGGGAGAGAGCGTGGTGTGTTCCAGGTCAGGGAGGCCACGGGGTGGCTAGAAGCAGAGAGCGAGTGAAGAGGTTGGTGCTGGTAAGGCCACTTGGGGCCTTTGTCATGAGGGGTGGGGAGAATCCTTTACAGCAGTGTAAGCAGGGCAGTGACATAATTCACATCTGCTTGTGTCGGAAATGCTTTAGGCACTGTGGAGATACAGGAGTGGCGGTAGAGAGGCTACCTGGAAGGCCACTGCAGTTGTCTAGGCAAGAGGTGGTGGGGGCAGGGATGCAGCAGGGTTAGATCTGAGAGACTCTGGGTGGAACTGATAGGACCCCCAACTTTTAATAGATTCCTGTCACTCTGAGAAGCTCCTTGTAGTCAAACAAGTATATTATCTTATTCCTTAATTTACACCCCCTACTTTGGTCTCTGGAATAGTGGCTTGTTCCCCTAAACTTTTCACTGTCTTCCATCAATGGAAAAACCCTTTTCTGTAGCCTCCAACAAGCTAGGGCAGATACTGCTGCAGAAGTTTTTCTCCCCCTGGGGAATGACTTTGTTTTTTGTTTGTTTGTTTGTTTTATTTTTTTAAATAGAGACAGAGTCTTGCGATGACACCCAGACTGGTTTTGAACTCCTGAGCTTAAGCGATCCTCCTACCTGGGCCTCCCAGAGTGCCAGGATAACAGGCGTGAGCCACCACACCCAGCTGGAAATGACTTTGATCGAAGCTCTGACAGGCAGGGGCAGATATGGCCGATCCAGGGTTGCAGGTGCCTACGAGAGTTGGGTGCCCAGCAGAACTGCTGTGCAGTGCAGATTGCGTGACTAGATAACCAGGAGGCTGGCTTTGTGGGCAGTACTCTTGGCTGCTGATTTCCTGGCTGAAGGGCCGGGAGGGGACTGGCTCCTGTCATTCCTTTCACTGTAGTAACTAGGTGTAAAGAGCACTGTTACCTGGTTTAACTTTTGGTCCTGGTAGCAGAGAACCCACCAGAAACTTCATCCCTAAGCCTCTGGGTTCGTGATTGGGCAGTTTGAGTTAAAGACCATCTGTGTGACTCTGGGCAAGTCACACATATCCTGGCCTTTGTTTCCTAGACCATAAACTGGGCATAATCATTTCTGCCCTGCCTGAGCTGCCAAGAGGATGAAATGAGGTCATGGCTGTGCAGATTCTTCAAAAGCAGAAAGCCCTGGGCATCCTCAGGAGGCAGCCTGCCCTGAAGTCCTGGACCTTAGGTTTGGGAGTCAGCCAGTTCAGGGTCAAGTCCTGATGCCAACACCTAATGTTAGACATTTAAGGAGTGGCCCGACATTTCTGAGCCTCAGTTTCCTCATCTTGAAAATGATGTTGAGAGAATATTTTAGATTGTTCAGTGGATTAAATGGAGGAATACCTGTACAGCATTGTCTGCCGCATAAAAAGCTCTTGTTAAGGGCCAGGCGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAATATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGTGTGGTCGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAAATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAATAAAAAATAAAAAAGCTCTTGGTAAATGTGGCTGATGTGTGTCTGTGTGTGTGAACATCCCTGCATGTGTGCGCATACATATGTATGTGTATGTTAGGGGAGAGAGAGTTTAATGTCTCCAGGACCCTATGCTTCCAGGATGGCTTCATCCACTGTCACTGCCTGGGTTCTCGCATATGGGTCACTCACCTCTGGAGCTTCCGCCTGAGCAGGCCTAGGGCCGGGCCCAGCACTTGATTTACAAAGTTCCCAAGGGATCCTGGCAGGCAGCTGGTGTTGGGGACCCGTGCTCATTGTAGGAGTCTTCAGTAGGGATCATCATCTCTTTATTTATCTTCCAACTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTCGCTGTTTCTTCCAGGCTGGAGTGCAGTGGCACAATCTTGGCGCTCTGCAACCTCTGCCTCCTGGATTCAAGCAATTCTCGTGCCTTAGCCTCCTGAATAGCTGGGATCATCGGCGCGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATTTTTGGCCAGGGTGGTCTCGAACTCCTGACCTAAAGTGATCCACCCACCTCAGTTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCTGGCCTCCAACCTTTTCTTATGAAAATTTTCAAACATTCAGGAAAGTTGAAAGGAGAGTACACTGGATAACTATCTGTATACTTTCCATCTAAATGCAACAGTTGTTAACGTTTTTCACATTGCTTTATTTGTGTGTGTATTATATATAGAGAGAGTAAGTTGCAGGTGTCTGACCTTTTACCATCGAGTACTTCGGTAGGATCTCCTGAGAATAAGGGCATTGTCAGCCAAGTGCGGTGGCTCACACCTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGGAACCCCCTCTCTACTAAAAATACAAAACAACAACAAAAAAATGCCAGGCGTGGTGGTGAGCACCTATAATCTCAGCTACTTGGGAGGCTGAGGTGGGAGAATAGTTTGAACCTAGGAGACAGAGTTGCAGTGAGCCAAGATCACTCCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAGAAGAAGGGCATTCTCCTACTTACCATTAGCACATCTGGGAAGATTAACCATGAGTCCATAATATCACCTGATACCCAACCCATGAACAATTGAGATGTCCTCAGCTGGTGCCAGTGGTATCTTTGGATATTCTCTTTCTTTGGTCTCTTGATTTGGACTAGGCCTCCCCTCCCCAACCCCATCCCCTCAACAGCTGACTTTTTGAAAAGGCTTGGCCAGCCTGGACGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGCCAGGAGTTCAAGACCATACTGGCCAACATGGTGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGTGGTGGGTGCCTGTACTCCCAGCTACTCAGGAGGCTAAGGCAGGAGAATCACTTCAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGGTCGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCTGTCTCAGGGGGGCAAATAAAAGAAAGAAAAGTCTTGGGCTTGGCCAGTTGTTTGTTTTTGACATATTTAAGATTTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTTGAGACGGAGTCTCGCACTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCCACTTACTGCAAACTCCGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGTCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTGGTAGAGACAGGGTTTCACCGTGTTAGCTAGGATGGTCTTGGTCTCCTGACCTCGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCTGTTTGTTTTTTGAAATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCAATCTCGGCTCACCACAACCTCCGCCTCCTGGGTTCAGGTGCTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTATACGCCACCACGCCTGGCTAATTTTTTTGTATTTTTAATAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCCGACCTCAGGTAATCTGCCCGTCTTGACCTCCCAAAGTGCTGGGATTACAGGTATGAACCACCGTGCCCGGCCCTAAAGTTTTTGTTTTAAATTGAAATGTAACTTACGTGCAATTACGTGTACAATTAGAGAATGTTTTTCTTGTGTGTGTACCTGTGTAAGTGCCAGTCAGTCAAGATACAGAACATGTCCACATCCAGAAAGTTCCTGCATGCCCCTTCCTAGTTAGTACTTCTCACTGCTCTGACTTTTAGCACCATAAGTTAGGTTTTAGGACCATTTGTTGTATTGCAGAATGTCCCATATTCTAGGTTTGTCTCCTTGTTTCCTCATGGTGGCGTTTGACTTGTTCCTCTGTGCCAGTGTATGTCCCATATGCTAGATAGGTCCAGGCTTAAAAGTAAACATTTACATTTCTGGCAAGAACACATTGTCCTCCTTCACATTGTCCATTTTTTTTTTTTTTTTTGAGACAGTGTCTTGTTGTCACCCAGGTTGGAGTGCAGTGATGTGATCATAGCTCACTGCAGCCTCAGCCTCGTGGTCTCAAGTGATCCTCTTGCCCCAGCCTCGCAAGTCGCTGGGACCACAGGTGCGTGCCTTCACACTCGGCTAACATTTACATTTTTTGTAGAGACGGGATCTCCCTATGTTGCCCAGGCTGGTCTTGAACTCTTAGGCTCAAGTGATCCTCCTGCCTTGGCCTCCAAAAGTGCTGGGAATACAGGCATGAGCTATTGTGGCCCGCCCATGTTGTCTCTTTTTTTGTTTTTGTTTTTTTCTCCTGAGACAGGGTCTTGCTCTATCACCCAGGCTGGAATGCAATGGTGTAATCACGGCTCACTGCAGCCTCGACCACTGGGGCTCAGCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTTCAGGCATGAGCCACTGACCCCAGCATTGTCTTTCTTGATGGGCTCCTCCTCTTCTCCTCCAGATGAGCTCCCCACACAAGAACTCTGTGCCATCATCCCTAAATGAGTATGAGGTGCTGCCCAATGGCTGTGAGGCCCACTGGGAGGTGGTGGAGCGGATCCTGTTCATCTACGCCAAGCTCAACCCTGGCATCGCTTATGTGCAAGGCATGAATGAAATCGTGGGGCCCCTCTACTACACCTTTGCCACCGACCCCAATAGTGAGTGGAAAGGTAAGAAGGCTCTTGGTGCCCACATCCCTCGTTGCTGGCCCGTGTCAGGCTGTGCACCTCACTTTCCCTCTCGGGCCTCTGTTCTCCCTCTGCCAGATGAGGAGTTGGCCTGGATCATCTCTGAGATCCTTTGCAGCTGTGATCTTCTAGAATGTTGGTTGTTTACTGATCTCTTGATATTTGTAATTTAATTCTGATAGAGAAGGTGGATATGTAGGAAGCCGAATTATAAGATTTAAATAATGATTTTTAAATTGTCATCAGGAGAGTGTGTAATAAACTGCTAAGTGAATGTACAGTATTGCCAGATGTGAGAAGAAAGAGGCGATGTCTTTAGCCTGGGGGTGGAGAGGGGTCAAGGACAGAGGAAGGACTGAGCCAGACCATGAGGATGGGGCAACTCGGCGGGGCTCAGAGCAGGGCAGATGTCTGGTAGGTGAGAGGTGGGGTGGGCCTGGAGTGCGCCACTTCTGCCCCCATCCTGCTCTCTCCCAGAGCACGCCGAGGCAGACACCTTTTTCTGCTTCACCAACCTCATGGCCGAGATCCGGGACAACTTTATCAAGAGCCTGGATGACTCGCAGTGTGGCATCACCTACAAGATGGAGAAGGTTTACTCCACCTTGAAAGATAAGGATGTGGAGCTCTACCTGAAACTGGTGAGGACCCCAGGAACAGACGGGTGGAAAGGGACAGGAGGCAGAGAGTTGCTGTGCCATCCCAGCCCAGGGCGAGGTCTCGCTTGAGTCTGGGGGTCAGAAGTAGCTGCTGCTGCTGCTGCCCGGGACGCTGACCCATGTGCTGAGGCAGCTGATGGTGGAGCCCAGCTGGGAGGGAAGGGGAAAGTTGAGAATGGTGCCCATTGTGTGCCAGGCATACTGCAGGGCATTTACTATGAACTAAATTGGTTAAGCTGTTAGTAGTCTTCTGAGGTAAGTGTTAACTTCATTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGACTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAAGCTCCACCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGCAGCTGGGACTACAGGCACCCGCCACTGTGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGAGTTTCACTGTGTTAGCCAGGATGGTCTTGATGATCTCCTGACCTCGTAATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCAGCCCTTTTTTTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAGGACTCTCTCTCTCAGAGGCCAGGTTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCATGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGCGTGCGTTACCACGCCTGGCTAGTTTTTGTATTTTTAGTAGAGATGGGATTTCGCTGTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCTACCTCCCTCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCTGGCCAGGAATAATGATATCTTTTTAAACAAATATGGGTTGAGTGTGATGGCTCACAGTTGTAATCCTAGCACTTTGGGAGACTGAGGCGGGAGGATCGCTTGAGCCCAGAGGTTGAGCAACATAGTGAAGCTTTGTCTCTACAAAAAATTTAAAAACAAATTAGCCAGGCATGGTGGCACAGGCCTGTAGTCTCAGCTACTCGGGAGGCTGAGAGAGGAGCCCTCGAGGTCAAGGCTGCAGTGAGCCATCCATGATTGTGCCACTGCACTTCAGCCTAGGCAATATAGCGAGACCTCATCTCTAAAAAAAAAAGGAAGTATGCTTTTGCTGTTTTGTAGCATGCTTTTTCAGTTAATATTCACTGTGGCTGACCAGAAGGCTTGTCTCTACTGGGAATAATTGCCTGTGGAATTGTTCTGTGGATTAAATGAGTGAGAGGACATATTTAATATTCTAAGCATAGCCCAGGCTTTTAGTAAGTGCCCTGTGATGGTCACTCAGCACATCCACAAACCCAAGGCTATCATCTGCAAAGTGTGTGAAAAGAGTTTGAGCCATCATTTATAAATCTGGAGAGCTTATTATATAAAGGTTTGGGTTTCCAGCTTCTCTTTAAAAAATAGGAAGATCTGAGGATGTTGGCTGGCAGCAAACAGGCTCCGCCCCTTTACCAGGCAAGGCTGTCCGGCAGCCTGGTGCCAGCCCTGGTGCTCACACCTGGCATGCTGGGCCCTGCTGTTCTGAATTCACTTCTGACCCACTGCGTGGTGCTCCATGGCCGGCAGCCAACACAGAGTCATGCCCCCCACCCCCCACGCTGTCTCCCCAG
Seq C2 exon
CAAGAGCAGAACATCAAGCCTCAGTTCTTTGCCTTCCGCTGGCTGACACTGCTGCTGTCCCAGGAGTTCTTGCTGCCTGACGTCATCCGCATCTGGGACTCCCTCTTCGCCGATGACAACCGCTTTGACTTCCTCCTCCTCGTCTGCTGCGCCATGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021:ENST00000223865:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(31.9=53.7)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(58.2=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains