BtaINT0145416 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012480 | TBC1D13
Description
Bos taurus TBC1 domain family, member 13 (TBC1D13), mRNA. [Source:RefSeq mRNA;Acc:NM_001206715]
Coordinates
chr11:99304454-99307830:+
Coord C1 exon
chr11:99304454-99304613
Coord A exon
chr11:99304614-99307622
Coord C2 exon
chr11:99307623-99307830
Length
3009 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGA
5' ss Score
3.37
3' ss Seq
CCCCTGCCCTTGTCCCCTAGATG
3' ss Score
11.33
Exon sequences
Seq C1 exon
GAGGTTGTGTCCAGACATATCCTTCTTCCAGAGGGCCACCGAGTACCCCTGCCTCCTCATCCTGGATCCTCAGAATGAATTCGAGACCCTTCGTAAGCGGGTGGAGCAGACGACCCTGAAATCCCAGACGGTGGCTCGGAACCGGAGCGGCGTCACAAAT
Seq A exon
GTGAGAGGCAACCTGAGGGCCTCGGGGGCTCCCCGTGACAGCCTTTTCCTTCCTGCTTCCTCGGGACTAGTGGCCACGGGCCATTGGGCCCCGACCATCCGCCCTGGCTGTTACCCAGAGCAGCTTTGGTCCTGCCCCATCCCTTTCCAGGCTCTTGCTGAAAATCAGATTCGAAGGCTGGTGTCACGGTGCCCGGGGGTGGGGGGTGCCCTGCTGTGCAGTGCTGGTCTGTGGTGGAGGCGGCGCTTGGAAAAGGAACTTCAAGTGTGATGAAGTGCAGTGGGAACAGTGATGGGCAGGGACCTGACCTGGTCTGGGCATCAGGGTGGACTTTGCTGATGAAGTGACATTTAAGCTGAGGCTCAAAGGATGAAAAGGAAAGGGCCTTCCAGGGGGAGAGGAGGGCATGTGTGGAGAGAGCAGGGTGTGTTCAAGGGAAAGAGGAGTCCAGCCTGAGCTGGGTAGGGGAGAGGGCGAGGGAAGGGTGGCCCGAGTATGCTGGAGAAGTGAGTGATGGTGAGGCCACACGGGCCTTTGTCCCGAGGGCTGGGGACCCCTGCAGCATTCCTGGAGCAGGGATATAAGACTGCCTTTGTCGAAGATTGCCGTGGACACTGTGAGGATGTTGATGGGAGAGGCGGGAATGGAGGTGGAGAGGCCTCCTGGTGCTGTGGTTGGTAGGGCGGGGCCTGGGGTAGAGAGGGAGCGATGTGAGACGTCAGAGAAAGGAAGGGTGGGTCTTGTGCTGGCTAAGTTATGCTGCGTGTTGGAACCTCAGGCTTCGAGCAGACTTAGGTAATTCTGAGAAGCTGCTTATTGCTAAAAGGTATATTGTCTTATTCCTTAACGCCTACTGCTTATCGTGCCTGGAGCTTTGACTTATTCCTCAAAATTTTTCACTGTCCTCCAGCAATGGAAAAATCTTCTGTAACTCCCAGCAAGCTAGAGACAGGTACTGTAGCAGCTCCACTTGCCCGCCCCCCACCACCACCCGGGTGGAATGACCAATCAGGGCTTTGTTTCCTGGAGACCAGCCGTCTTTCCTCCCAGGAGTGACTGGGAAGTTCTGGTTGATCCACTGGTTCCACCTGCCCACAACAGAGCTGGGTGCGTCAGGAGGCGCCAAGCGCTTGGCTTAATGACCGCGTAGCTGCCTGAGTTGGTGGTCGTCCTGCTTGGCTACTGATGTTCTGTCTGCCTGGAAAGATAAGGACCTGGCTTCTGTCATTGCTTTCAGTACAATAATTGATGGCTGAGAACTGAGGACTAGGGTTTGGACCTAGTCCTGGTGGGAGAACCAGACCACACGCTCCATCCCTAGGCCTCTGGGTCCAGGGGCTGGGCGGTTTGAGTTAAAGCTGGCTGACCGTCTGACGCTGCGCAAGTAACACCAGACTTGCCTTCCTGGGCCTTTGTTTCTTCTTCTGTTTACTGGGCGTAATCATTTCCGCCCTGTCTGGCTTTTAAATTGCCAGGAGGGTGAACTAAGGTCATGGCTGTGCAGATTGTGGGAAAGCAGTGGGCACTCTCTGAGGCCTGGGCCTCGGGTTCTAGAGCCAGCCTGGGTCCAAGTCCAGTGGCACCACTCAATGCGAGACGTCTGATGGGTGGCCCAGCGTCTCTGAACCTGTGTCCTCATCTGGAAACTAATGTGGAAAGAATCTTCTAGGCTGTTTTGGGCATTAAACAGGAAGGCTTGTAGGGCTTTGTCTTGCCCATAAAACCCTCTTGGTAAATGTTAGTGATATATGCGTCTTAGTGTGTGCACATGTGCACACATGTGTACGTGTATAGATGTGTATATATACTGGAAAAGGACGCTTAATGTTCTCAAAACCCTAGGCTTCCACGACAGCATTATACTCTGTCCCTGTGGGGATGTGCCTGTGACCTTCATACAGGTAACCCCAGGCACTTGAACTTTTACAAAGCTCCCAAGGGATCCTGACTTTGGGGTCCTCTGCTCTATTGTGTGAGTTTTTACCGAGATCATCTCTTCATTCATCTCCCAGCTTTTTCTTAGGAAGATTTTGAAATATTCAGAAAAGTTGAAAGAAGAGTACAGCACACACCCTTACACTTTCCACCTAAATGCACCAGGTGTTAAGCTTTTGCCGTGTTTGTGTGTGTGTTACATAGAGAGGAAACTTGCAGATGTCCTGACCCCTTACCCCTCAGTCGTTCAGCAGGCATCCCCTGAGAATCAGGACATCCTCCTCCTCACCACTGTCACATCTGCCAGTGTTACCCATAATCCTTAATAACAGCTCACATCCAATCTTGGTTCGGGTGTCCTCTAGTTGTATCAAGATTTTTTTTTTTTGGCCACCCTGTATGGTCTGTGGGATCTTAGTTCCTTGACCAGGAATTGAACCTGAGCCCACACAGTGAAAGTAAGGAGTCTTGTCCAGTGGCCCGCCGGGGAACTCCCTGTACCAAGACCGTTTTTGTCATTTTGAATCCTAACCAGCACCAAGTTAGGGTTTATGCGTTGCACTGGTATGTTGAGTTTCTTTAGTCACTGCAGCTGGAGCAGGCCTCCACTCCCCCCACCCCCGACAGCATTTGACTTCAAGAATCTTTACCTGTTGTCTATTTTTGACATATTTTGAATTTTTTTTTTAATTGAACTATAACTTACATACAAGAAAAGCACAAACCTTAGGTATACAACTAGATGAACATTTTCTCATGTATAAACCTACATTAACTGTCAGCCAGATCAGGACATGGAACACTTCCATCATCCAGAAAGTTCTTCCATGCCCCTCTCCAGTCGGTACCCCTTCTCTCAGAGGTAAGCACTGTTCTGACTTTTATCACTAAATTATTAGATTTCAGTCCCTCTGGCTTGTGGAATGTTGCCCATTGTGGATTTATCTGCTCGTTCCCGGTGGCGCTGGACACATCCCTCTCCACCCTGGGTTGCCCAAGAATGGAGGTTAAGTTTCGGCTCGCTGTCCGTCATGCCTCCAGCCTTCTTACTGAGCCCCTGCCCTTGTCCCCTAG
Seq C2 exon
ATGAGCTCCCCACAAAAGAACTCGGCACCCTCCATGAACGAGTACGTGGTGCTGCCCAACGGCTGTGAAGCCCACTGGGAGGTGGTGGAGCGGATCCTGTTCATCTACGCCAAGCTCAACCCCGGCATCGCTTACGTGCAGGGCATGAATGAGATCGTGGGGCCCCTCTACTACACCTTTGCCACCGACCCCAACAGCGAGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012480:ENSBTAT00000016559:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(28.8=67.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development