RnoINT0147931 @ rn6
Intron Retention
Gene
ENSRNOG00000015970 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:RGD Symbol;Acc:1591937]
Coordinates
chr3:8709104-8713201:+
Coord C1 exon
chr3:8709104-8709263
Coord A exon
chr3:8709264-8712990
Coord C2 exon
chr3:8712991-8713201
Length
3727 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
AGGCTCTCCCTTCTCTCCAGATG
3' ss Score
8.77
Exon sequences
Seq C1 exon
GAGGCTGTGCCCAGATATATCCTTCTTCCAAAGAGCCACTGAGTACCCCTGCCTCCTCATCCTGGACCCGCAGAATGAGTTTGAGACCCTTCGTAAGCGTGTGGAGCAGACGACACTGAAGTCTCAGACGGTGGCCCGGAACCGAAGCGGGGTCACAAAT
Seq A exon
GTAAGAGCCATTCGGGGACTGGAATAGTTTTCTTTTAAATATTTATTTATTCCATTTGAGTGTTTGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACGTACATATGCACTATGTACAAGTCTGGTACCTGTGGAGATCAAAAAAAGGCATCAGATGCCCTGGAACTGGAGTCGTGGATGGCTATGCGTGCTGGGAATCGAACTCTGGTCCTCTACAAGAACAAGTGCTCTTAACTGCTGAGCCATCTTTCCAGCTCCCTGCGGTCTTTTCTTTCTTCTCTTTTCATTTTTTGTTTTTTTTCAAGATTTATTCAATTATGAGTACTCTGTCTGCTAGTTTGCCTGTCTGACAAAAGAGGGCATCAGATTTTATTACACATGGTTGTGAGTCACCATGTGGCTGCTGGGAATTGAACTCAGGACCTCTGAAAGAGCAGCCAGTGCTCTTAACCGCTGAGCCATCCATCTCTCCAGCCTCTAGGGTTTCTCCTGATAGGCTGTCCCTTCCTGTCTCCTTTGGTGCACTGGCCACAGGGCGCTTTCTGAAGGTTGCTGTCAGAGGCCTTTTTGTTGTTGTTCCAGCTGGGAATGCTAGCTGCAGGCTGAGGTACTGTCCTCATCTTAGACTCTGCTGCTAGAGGTAAAGTGAAGCTGGTTCTGAGGGACATCCCAGTGTGGTGTGAGCAGTAGTGGGGTAGCTAGCAGTCCATCCAGGAATGGGCCTCAGAAGCTGCAACTGACCTAGACAGCAGGACAAGAAGGACAGGGGAGAAATAGGTTTCTGAGTATTATGGAAGGCATGTGCCAAGTCCTCAGATGAGAGTGCCAAATGTTCCAGAGGGGGCCTCAACGGTAATTCTGCTGCAGAAGAAAAAAGCCCTTCTGACTGAGCCCCAGTGGCCAGTGGGCCTCCTCCTCACACAGGCTATCCAGTGTATGTCCCGTTACCCACTGTGCCAATCCAATCATGAACTGACTGCCCATGGCCATGAGTATTGAACACGTGTCACCATACCCTTCCTGAACACCCTGGAGGAGGTTACCCAGCTGTTTCTCAGGCCTAGGACTGGTGGCTGGTTTTAGATTTGTGTTGACTGTTGAAAGTTATTTACTGTATAAATATAATTTGTCACTTTTTTTGAGAAGAAAAAACTTTAAACCAAAAATAAATAAAATGCCAGACTGTGGTAGATCACACCTTTAGTCCCAACATTTGGAAGGCAGAGACAGGCAGATCTCTGAGTTTCAGGCCAGCCAGGTCTATAGAATGAGTCCCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCGAAAAAGAAAACAAACAACAAAATCCCTTTATTATTATACAAGGGATCTGGATGGGATAGGATGTAGCAAGCATTCACTGACCTGATTAGTCATGTGCCCATTCCAGTGGCTATGAGTGTGCCGAAGGGGCCATCATCACTCTGCACCGGGGTTTCTCCAATGCTGTCTGACAGCTCCCAACCCCGGAGTTTAATCCTGAGACAGGAGAAGGTACCAAACAGTGCCCTGGCCACCATTCCCACAGCAAAACTCACGACAAAGCCCACCCTCACATGGTCGAAGCAGCCACGTGGGACTGTCAGTCGGCTCTATGCCTCACACCAAAAACGTAATTTATCATTTCTATCATGCAAAAAACAATGAGGGCCCCAGTGGCTAGAAGCAGTGAGGCATGAAGGAAGGTGCTGGAAGGTCCCGGAAGAGTCGGTGTCCGGGAGGTCAGATAGCCTTGTCCAGATGGCTGGTGGGCCGGCCCTTGGAATATTCTGAACAGCAGCAACCTTTGGTCCGGGTGACCTCATGCATGGAAAGCATATCAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCAAGCTCCAAAAAAAAAAAAAGGAAAGCATATCAAAGCAGACGGCTGCGTTTGTCCAGGCCACAGTTGGGTTCCGGCAGGGACAGATCTGGAACATAGAAGGGGGCTGCTCTGGGTTAGCCCTGAGGGTTGTTGAGCTCAAGATCTAGCAGACCCTGCCACTTGTGGCAGCTGATATGGCTCCCCATCTCTATTCCCCAAAATGAGGTGTATGTCTGTATTTCTCCATGTAGACCCGCTGCTGCATGTAGACACCTGTAGCAGTGACTTGTCCCCACATGTCAGTGGCTTTCTTCAGTGTGCAGGCCTCGCTCTGAAGCCTCTCCAGCAGGGAATAGTGGACTGCACAGATTTCTCTCTGAGTTGCTAACTAGTGAGGGTGTTGATGGGGCAGTCAGGACAGGGGCAGTCACTCCTGGCCCCATGTACCTGCTGCAGAGTTAGGATTCACTGGAGCTATGCAGAGCCCAGGCTTGGTAAAGGAACTGTGGCTCACTTGTGCATCCGTCTTGCATGGAAGCTGGTGAAGGCCCAGCCCTATTGATCCTTTTGCTGCGGTTTTGTATATGAGGGTCAGGCTTCTCCCATTTTATCTTTGGAGCTGGTCCTCACAGTCCAGGATCCTCCCGAAACTTCATCCGTGGGACTCTAGACCCATGGTAGGGTGGTTTAAGTTAGCCTTCTGTGTGACTCTGGGCTTTTCCCTCCTCCATAATCTGGATCTGATCACTTCTGTGGAGCTACAGGAGGAAATGAGGTCATGGAAGGCAGGTTCTTGGAAAGCCGGGAGTACTGGGCCTTCTTGGGAGACATCCTGCCAGAGGCTTGGCCAGAGGCTCTGAGCTAGTCAGTCCAGGTTCAGGTCTGTGTGAGCCCCAGTTTCTTCCTCTTGAAATGTTCCAAGGTGGTGTCATGGCTCGAATCCCGTAATCTGAGGCAGGAGGATCATCTCAGGGTCACCCTCAGCAATATGACAAGTTTGCAGTCCAGCTTGGGCTGTGCCCAGCTCTTTGAAAAAAAAAAAAAAAAAGAAAAGAGAAAGAAAATGGCTTTGAGAAGAGTGTAGGATCAGTTGGAGGAGTGTGGTCTGCTCCTGAGTGCATGTGTTTCTGACATCCGTATGACAAGTGGTGTGGAGAGAGCTCAGACTCCCTATGCTCTGTTTTAAGCCTCATACAGTCTCTGCCAGGGTCTCACCTGCAAGTCTCCCAGCTCTGCAGCCACTGGGAAATATATATATATTTTTTCTTATGGTTACACAGGTGTCACGAGGGGTCTAGATTAGGATTTCTCACTGTTCAGTTCTTTCCCTCCCTTTCCCTGCCACTCACTTCCTTTTCTCAGAAGAAACCTCTGCTTATTTTGTTTTTGTTTTCCAGACGGTTTTTCTGTGCAACTTCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCTGGTCTTGAACTCAGAGATCCACCTGCCGCAGCCTCCTGAGTGCTAGGGTTAAAGACATGCACCACCACCCGGCATAACCTCTATTTTGTGGTTGTTTATGTTTTGTTTTGTTTTGTTTTAATATAACCTTGGCTAGCCTTAAACTCTCAAAGGTCTGCTTGCCTCTGCCTCTCCAGTACTGGGACATACCGGTTCCGTCACACCTGTTGTGAGCGCTGTGTTTAGCCTACTTGTAACTGGAAGTCTCCTGCTCTATCGGCGCCTCGGGTCTGACGTGTTCTTCCTGCCCTGTCTTGCCCATAAACTAGGATGTTGTCAAGCTGGGCTTAATGGAAACACTTATCCTGCTAACAGGCTCTCCCTTCTCTCCAG
Seq C2 exon
ATGAGCTCCCCGCACAAGAACAATGCACCATCAGCCCTGAACGAGTATGAGGTTCTACCCAATGGCTGCGAAGCCCACTGGGAGGTGGTGGAGCGGATCCTGTTCATCTATGCCAAGCTCAACCCTGGCATCGCTTATGTGCAGGGCATGAATGAGATCGTGGGCCCCCTCTACTACACTTTTGCCACTGACCCTAACAGCGAGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015970:ENSRNOT00000021431:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(29.3=67.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]