GgaINT0126625 @ galGal3
Intron Retention
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:689163-691305:+
Coord C1 exon
chr17:689163-689276
Coord A exon
chr17:689277-691165
Coord C2 exon
chr17:691166-691305
Length
1889 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTGTCAATTGTCTCATACAGCAA
3' ss Score
7.61
Exon sequences
Seq C1 exon
CCGCCCAGCCGGCCGGGCCGGGCCTGGAGGAGCAGCTCTTCCCGCAGGTGCGGGACCACTTCCGCTTCGAGGCCGGCGGCAACGAGACCTTCCCGCAGCGGTACCTGCTCTCAG
Seq A exon
GTGGGTGCCGAGCGGCGGGGGGGAGGGGGGACGCGCGTTTCCCTCTGCTCGTCCCCGGACCCCACTGCAAATCCCGGCCCCCTTCCCTTCCTCTCCTGGAGAGGCGCCCCGCGGGTCCGTGCTTCCCATCGCCGATAGCCCCACATCCGCAACGCCGCCCGCCGTGCTGAGCAGCGGGGGCTTAGCGAGGGGTGGGTGGGCTTCCTGCCCGAGCACTGATCTGGGGACTGACGGAAAGAGGGGACTTTTCCACGCAAAATACCCTCACTTTCATAACAGCGTCGTTAACCAGTGGCAGATGTGAGTGGATCCCGCGTGCCCGGAGCTCCCAGGCAGAGATATGCAGTGGGAGAGCAGAGGAGCACGGCGCAGAGCTCAGGCAGTGCTGCCCCCGCCGCTGTACCTCACCTCACTGCCTCCCATCTCCTGTCACACAGCGCAGTCCTCACTGACACCTGGCTGTGTGTGCGGCCCCAGGATCAGTTCGGCACAGAGATCTCAGAGCACCAGGAGGGATTTTAATAGCGTTCCTGGGACTGAAACTTCACAAATGGCCCTTTGGTAATGGAACTTTGGGATCCTCTGCTTCAGAGCATTTATTTTTTGAAGTCTTGTGTTTTACCTACATATCCTGCTGGGGCAGATTCTGTAAATGCAGAGGTGAACAGTGGCTGTGAGAAACAGAGCATGCTGAGCAGTTTCTCTCCCCCTCTTCTGCTTCTTGTGCAACGCGAGGCTTTTCATGTTGCACAACCAGGCATCTGAGTGGCTCGAGGTTAGCTGGCAGTTACCCCAGATTTCAGCCTAGAAATAGGGATCTCTTTAAGGAGCCTGTCACAAAATCACAGAATCCTTACAGTTGGAAAGGAACCTTTAAAGATCACACGCTCCAACTCCCTTGCAATGTAGAGGGACATGCACAACTACATCAGGGCACCCAGGGCCTGACCCAGCCTGGCCTTGGAAGTCTCCAGGGATGGGGCTTCCACCACATCTCTGGGCAGCCTGTCCCACTCACGCGTTTAGCTCCCACGCGTTGTTGCTTACTACAGGTCGGGTTGGATAGTGGGAAGAATCTCTTCTCCATAGGAGCAGTTGGGCACAGGCAAAGGCTGCCCAGGGAGCAATGGGGTCACCATCCTTGGGGGCATCCAGGCAGAAGGTGAACTGACCCCAAGGGATGCGGTTAGAGGGCAGCACTGGTGGCAGGCAGAGCATTGAACTCAATCATCTTAGAGGTCTTTTCCAACCTCAGTGGTTCCGTGATCCTGTTGTGTGGTACAGGAGGCAGGAGCATATTGCAAGAAATACCAGAATAAAGATAGCGCTTCATTTTCCTGTCTTTCTAAAATCTGCCACTGTTAACAAAGAGTAGCAATTTCACTACCAAAGCGTTTCAAACCCATTTCTAAGCCAACACTCCCTCTGGCAAATCTGCATTGAGAGTACCAAGAATGCTCTGTGTTACACATCGCAGTAAGAGCAGTGTAAAGAGGCAGTTGTTCTCCAACATTCATTTTGTAGGAAAAATGATCTGTGCAGGCGATGGTTTGGGCTGAAAAAAAGGTACGTGCGTGGGAAATAGTGGCAAAATTTTGGCTCATTTGGAGGCATCTGTTTCCAAATGTCTTGCAACACTGACACTTTTAAGGGTTTTTAGGCAGAAGTGTAAAACTGAAGCCACATAGTGGTCTGATGGGAGCTCTCACCCCTAAGCAAGGGAGGGGTTTCTGTTGCACGGTCTCTCTGATACCTGCTTTCCTAGCACGGCCCTTGGGGATCAGGCTGTTCACGGTGTTTCCTCATTAAGCTTCTGTCCAAACACAGCAAAGTGAATTCTTTTGTGCTCTGACACATTTCTCATGTCTTCTGTCAATTGTCTCATACAG
Seq C2 exon
CAAAGTTCTGGAAGAAAGGATTTGGACCGATCTTTTTCTATACTGGTAATGAAGGCAACATCTGGACTTTTGCTGAGAACTCGGACTTCATATTTGAGTTAGCAGAGCAGCAGCAAGCTCTTGTGATTTTTGCTGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105:ENSGALT00000014829:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(5.4=59.0)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAGGAGCAGCTCTTC
R:
TGCTCAGCAAAAATCACAAGAGC
Band lengths:
232-2121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]