HsaINT0051828 @ hg38
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr9:137114243-137114576:-
Coord C1 exon
chr9:137114463-137114576
Coord A exon
chr9:137114383-137114462
Coord C2 exon
chr9:137114243-137114382
Length
80 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
CTCATCCGCCCTCCCCACAGACA
3' ss Score
11.31
Exon sequences
Seq C1 exon
CCCGCAGGGCCCCGGACCCCGGCTTCCAGGAGCGCTTCTTCCAGCAGCGTCTGGACCACTTCAACTTCGAGCGCTTCGGCAACAAGACCTTCCCTCAGCGCTTCCTGGTGTCGG
Seq A exon
GTGAGACCCCGGCCCCGGCCCGGCCGCCCCCGCCGTCCCGCCGCCCCCCGGCACCCTCGCCTCATCCGCCCTCCCCACAG
Seq C2 exon
ACAGGTTCTGGGTCCGGGGCGAGGGGCCCATCTTCTTCTACACTGGGAACGAGGGCGACGTGTGGGCCTTCGCCAACAACTCGGCCTTCGTCGCGGAGCTGGCGGCCGAGCGGGGGGCTCTACTGGTCTTCGCGGAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978:ENST00000473703:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(17.0=59.0)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAAGACCTTCCCTCAG
R:
CTCCGCGAAGACCAGTAGAGC
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development