DreINT0059759 @ danRer10
Intron Retention
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28560483-28560871:+
Coord C1 exon
chr5:28560483-28560648
Coord A exon
chr5:28560649-28560731
Coord C2 exon
chr5:28560732-28560871
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GAGTGCACTGTATGTTTCAGATA
3' ss Score
6.84
Exon sequences
Seq C1 exon
TGTATGCGTTTCACTGTTTTTAAAAAGGAAAACTACAGCAATGAGATCACATCTCACAGAGACCTTTCACTGGATTTCAAGGAAAAGTATTTCAAACAGATTTTAGACCACTTCAATTACAACAGTCTTGGCAATGGCACATATGATCAACGCTACCTTATTACAG
Seq A exon
GTAAACTAATATGCCTTATAAGTCTACCTGAATTTGTCATAATTTTTAAACTAAATCTTTACTGAGTGCACTGTATGTTTCAG
Seq C2 exon
ATAAGTACTGGAAGAAAGGCTATGGACCCATTTTCTTCTACACGGGCAATGAGGGGGACATAAGTGAGTTTGCACGTAATTCGGGCTTCATGGTAGAGCTGGCAGCAGCGCAGGGAGCCCTGCTCATATTTGCTGAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750:ENSDART00000037891:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(5.4=41.1)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGTCTTGGCAATGGCAC
R:
TCAGCAAATATGAGCAGGGCT
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]