RnoINT0050874 @ rn6
Intron Retention
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2572843-2573170:-
Coord C1 exon
chr3:2573057-2573170
Coord A exon
chr3:2572983-2573056
Coord C2 exon
chr3:2572843-2572982
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GACCCATTTACTTCCCACAGATA
3' ss Score
9.27
Exon sequences
Seq C1 exon
CCGACAGCGTTCTAGACCCTGACTTTCGTGAGAATTACTTTGAGCAGTACATGGACCATTTCAACTTTGAGAGTTTCAGCAACAAGACCTTTGGCCAGCGGTTCCTGGTGTCAG
Seq A exon
GTGAGTGCTGGCCCCACAGCATGGTCCTTACCTGCTTATCCCTGGCCTTACAGAGACCCATTTACTTCCCACAG
Seq C2 exon
ATAAGTTCTGGAAGATGGGCGAGGGGCCCATTTTCTTCTACACAGGGAATGAGGGGGATATCTGGTCCCTCGCTAACAACTCTGGCTTCATAGTGGAACTGGCAGCCCAGCAGGAGGCCCTGCTGGTCTTTGCTGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640:ENSRNOT00000017271:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(5.4=59.0)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAACAAGACCTTTGGCC
R:
ATGCTCAGCAAAGACCAGCAG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]