HsaINT0051828 @ hg19
Intron Retention
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140008695-140009028:-
Coord C1 exon
chr9:140008915-140009028
Coord A exon
chr9:140008835-140008914
Coord C2 exon
chr9:140008695-140008834
Length
80 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
CTCATCCGCCCTCCCCACAGACA
3' ss Score
11.31
Exon sequences
Seq C1 exon
CCCGCAGGGCCCCGGACCCCGGCTTCCAGGAGCGCTTCTTCCAGCAGCGTCTGGACCACTTCAACTTCGAGCGCTTCGGCAACAAGACCTTCCCTCAGCGCTTCCTGGTGTCGG
Seq A exon
GTGAGACCCCGGCCCCGGCCCGGCCGCCCCCGCCGTCCCGCCGCCCCCCGGCACCCTCGCCTCATCCGCCCTCCCCACAG
Seq C2 exon
ACAGGTTCTGGGTCCGGGGCGAGGGGCCCATCTTCTTCTACACTGGGAACGAGGGCGACGTGTGGGCCTTCGCCAACAACTCGGCCTTCGTCGCGGAGCTGGCGGCCGAGCGGGGGGCTCTACTGGTCTTCGCGGAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-DPP7:NM_013379:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(17.0=59.0)
A:
NA
C2:
PF055777=Peptidase_S28=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAAGACCTTCCCTCAG
R:
CTCCGCGAAGACCAGTAGAGC
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)