GgaINT0127085 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7943086-7943312:-
Coord C1 exon
chr18:7943233-7943312
Coord A exon
chr18:7943142-7943232
Coord C2 exon
chr18:7943086-7943141
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CCTTCTCCATTGATCTGCAGCTA
3' ss Score
7.88
Exon sequences
Seq C1 exon
GATTTCTTCTTTGCTCACCTACAAGATACCAATGGAAGATGCACTACCTCTGTCCCAGGCTTTCTCCAAGCTAGAAGCAG
Seq A exon
GTACAGGGAAATAAATAAATCAGTGTGAAGACCTCTTTCAAATTGTTTGTATGGATTTGTATTTAAGAATGCCTTCTCCATTGATCTGCAG
Seq C2 exon
CTAAACAGAATTTCAGGCTTGAGGAGTACAGCTTGTCTTTGCACACTTTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCTTTGCTCACCTACAAGA
R:
CAAAGTGTGCAAAGACAAGCTGT
Band lengths:
127-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]