RnoINT0010504 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98412811-98415922:-
Coord C1 exon
chr10:98415843-98415922
Coord A exon
chr10:98412867-98415842
Coord C2 exon
chr10:98412811-98412866
Length
2976 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
GGGAATTCACCCTTCCACAGTGA
3' ss Score
4.71
Exon sequences
Seq C1 exon
GTACTCTTCTCTGATGGTCTATAAGTTGCCTGTTGAGGATGTACGACCTTTGTCCGAGGCTTTCTTCAAATTGGAGAGAC
Seq A exon
GTAAGTGCATGTTTAGAAATAATACTCCCCAAACCATAAAAATCTAAACCAGCTTTTTAAAAAAATCATAGAATGTTCATGATACGTAATTAATAGTTTGCTAAGACATCTAATCCAGTGGTTCTCAACAAGCTGGTTTGCCGTGTCCATCTCAGACTGACTTCACAAGTTTCCAAAATCATTAAAAGTGTTTTTTTTCACACAAGTCTAGGCAAATTCTGAATTGTGAGTCTTAGTAAAATAATAAAGAAAGTTACACATTCCAACAAATAATGGCACAGAGAATATATTCCTACTTAAAGGGTAGTAGTGAAAAGATAGCAAGCAGAGCTCTCACAAAAGCAAGGCCAAGACACAGAGTTAATTAGTTCTTCCAGCTCCATGTCAGACATCCAGAGTGCATATTGGCAGAAGGTGACTGCCTGCAGACCTATGAGCCTACCGTCTGAGGCACACTTGACGTCCTTCTTGGACCTGTTCTACTCAACCTCTGCAGCCTTCCTTAGTAGACGTTTTTCATCTCCAACATCCTAAAGTCTTTACCACCATGTGTGCTCCACACTTCAAAGCTTCCTGCATGGTCTTCCCAGGACTCTGACCCTACTACGCAAAGCCTGGACTCCCGAGCTTTCCTCAGGAACCTTGCACAAGCCCCGACTGCTCGGTTACTTCTGCATTAGGAATACATAATTAATAGTTTGCTAAGATATCTAATCAGTCGTTCTCAACAAGCTGGTTTGGTGTGTCCAGTGTTGCAAACCGTGCACCAAGTAAATGATCGCTATCAGCTTGAGAACAAGCTAGACGCCCTTAAAACGAAACTGTAGCAGCATCTGATCGTCGGGGTAGCTGAAACCAGAAAGTTCTATGCGAGGTTCTTCACCAGCAGGGTGTTGCTCTTCCTGCCCCTTCACTTGCTTTGAAAGTGAGCTTGCACTTTTATACCTTGGAGTATTTTATGGGAGAAGTCTGGCCCTCAAGACGGCTTTCTTATTTTCCCACTATTTTTCCTTCAATGGCACTAATGACTCTAACATTTGTAGTTACTATTTCTGTACCTACTTTGTCTATGGTAACTTTAAATGTACCCATGATGCAGACTTTTACAAAGATGTTTATTCTGCTTGTTCCTGTCTCTCATTGTAAAAGTGGCTAAAAGCAGCAAACCGTTATGCTGTCTTCCGAATGCTGCTTTGTCTCAAAAATTTCTGCCCTCTGTCTCTTAAAGGCTCCATAGCTTTCAAGTTAGTGTCTCAAACTGCGAACAATGTGGATAGCTTGTGAAGAACTTTTCAGGTCCACACTGCAGTACCCTCCATGGCTCTTCTGCTGCTCTGCTATCAACCTTGTCAGCTGCCCTCTGTTGAGAACTCACTCTTCCCACTTGTGTCTTTGTGACACATGGTTAGGGTCCCCCATGTAAGTTTTTCTTTTTTTCATCTTACTGTACACTCTCAGCTGCTGGTCTGTCGTCCTCCTGGATGTCTTGTTATGGCCTGGTTGCTAGGTTGGCGTATTCTGATGAGAAGCAGTCCAAGGAGCTCTCATAAACAGGATGAGTTTGTATTAATAGATAAGCGTCAATGAGATTGATGCTCCAGGAAGGCTGTGTCCCTGGAATAATATAGCCTCCCTTTAAAAGCCTTCTGATGCTTACACTTTCATCAATATCCTTTTCTAACACATATTCCTTCTCTTGTACTTAATTTGCTAACACTAAGGTTTTCATTTAGGGGTATTTTTAAACATTTGTTAAATAGCATTTTCCTAACTCATGACGGGAAGATGATACAAAGGGACAAATACAGACATGTAATTCACATTTCCTCAAGGGTCATTAGACAACATTAATGCTCTCAGCATACACTATTGATGGAACGAGGCTCAAAACCTTTCAAGAACAATGCATGCTCCATGAACATCCATATAGATTTTTTTTGTTTCAGAAGATCAAATGTCAGTAATGCAAACTCCAGCACAACCTTAGGGGCTTTCCTCTCTAGGGTGGCATTTGCCTATAGCCAGGAAGGTTGCAAGATTTTATTGAATCTGTCTTCTTACTATGTTCCCTCCTTGTCCCATAAGCTGATAGTAGGAGTCCCATTGAGGTAGAGTGGAAAGGGAAGAGAGAAGGGGAACATGGTACCAGGATCGGTTGATGATGGGCACTGTGGTCATCACATCTGTAATGACTGCACAGGAGCACAGGGCATCATCCTGAGACTGTGCTTTAGCGCAATGACTGCCATTGTCATTAGAGATAAAGAGACAGGAAGGCAGCCTGGAGCGAATGGTGTCGAATTTGTCACCTTTGAGAAATAGTGGCCCCCAGTCAAGAGATTCAGTGTCAGGGAAGGAATGGAAGAATAAAAGCCATCTCCCACTGAGGCCAGACAAGGCAGCCCAGCTTGAAGAACATACCCCACATACAGGCAAAGGCTTTGCGGATACTGAGACTTGAAGTACTAGGGTGGGGTGATACCCAGGAGGAGTAGGGGGGATGAAGGAAAGACTGTGGGAGGGGGTGACCAGGAGAGGGGCAGTGCACAGGATGTAAAGTGAATAAGTAAAAAAAATTAAATTAAAAAGGAATAAAAGCCATGACTCCCCTTTCCTCTTTTGTTCCCGCTGAAGACACATTGGGACATGGCCCAGCACTAGCCTCTGAGGCAGGAAGAAGAAGGGCAGATACAAGAGACACACGGGAGTTTTCCAGCACACGCAGAACCATGTTTAGCTTTATCTCATATTGGCGTCCTAGAATTTCTTATTCTTTCGCATCTTCTACTGCCTTTGCCAAATCTCTCAGGAAACATGTCTATCTTTTGGTGTGACTACATGGCATATTTACTTCCTAGTCGTTAACTCAAAAAATAGTTATTATCTTACATTTTTATTATCTGTGTATCCTTTTGTTCATAAATTCCTTGAATAAACAAAAATGTGAGGTCCTGACGGGAATTCACCCTTCCACAG
Seq C2 exon
TGAAAGAGAACTTTGACTTGGAAGAATACAGCCTCTCACAGTCCACTCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]