GgaINT0127086 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7941661-7943141:-
Coord C1 exon
chr18:7943086-7943141
Coord A exon
chr18:7941921-7943085
Coord C2 exon
chr18:7941661-7941920
Length
1165 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTCCTGCGGTGCCTTGCAGGTG
3' ss Score
9.92
Exon sequences
Seq C1 exon
CTAAACAGAATTTCAGGCTTGAGGAGTACAGCTTGTCTTTGCACACTTTGCAACAG
Seq A exon
GTATGTTGGTTTAGAATGGTAATGTCAGGAATGCTCCTGAAAGCGCGATGATGTTCTATGGCTGGAAAGCTATCTCAGAAAAAATCAAATCCTGCTGTTAATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAAAGACGATGATGTTCCTTGGCTGAACTCCTCTGTCAGAAAAAGTAGGATCCTGCTGTTAATTTTCAAATACCTTCCAGAAATGACAAACTGATACTGATCTCTTAAAGAAAAGTGTTGATTCAATCGTTTGTATGTGAGAAAGCTGCATCTATAGGAAATGTATTTCACAGTATAGTACAGGAAATGGCATATGCCTTGTTGGGGAAAAAAATATATAGGCAAGATTAGAAACTGTGTGTACAGGAAACAAAACCATCCCATGAGCAGTGTTAGTACTATCAGTCCTAGGCCATAAGGGGTCTGTTTCTCCTGCGGTGCCTTGCAG
Seq C2 exon
GTGTTCATGGACTTCAGCGGGGACCTGGAGGAGCCCGATCTGGAGGCAACAAATGAAGGGGCTGCAGAGCAGACGCTGCTCCAGCCCTGAGCCCTGGGAGATGTGAAGGAATATTTTCAGCACCTTCAGTCAGTGTTACCAACGTGTTGGACTGGGGATTGGGACTCACTCACCTGCATCGCATCACGTGGAGCTCAGCAGATACTCTTCAAAGAAAAGAAAAGAATTATTCATGTAATAAATAAAGCCTTTATCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.621
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAACAGAATTTCAGGCTTGAGGA
R:
TTTCTTTTCTTTGAAGAGTATCTGCT
Band lengths:
278-1443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]