RnoINT0010466 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98319487-98320871:-
Coord C1 exon
chr10:98320816-98320871
Coord A exon
chr10:98320215-98320815
Coord C2 exon
chr10:98319487-98320214
Length
601 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCCACCCTCTGTCCCCTCAGGTC
3' ss Score
12.67
Exon sequences
Seq C1 exon
TTAAACAGAGCTTTGACCTGGAGGAGTACAGCCTCTCACAGTCCACTCTGGAGCAG
Seq A exon
GTGGGTCAATTTCAGGGTCTTCTGTTCACAAACCTTAAGTGCACGATCTTTGGATCCAGGCGAGAGTTTTGTGACTTCAGTTTCGTCAAAAGCATGGAGTCATTCTCGGAATGTGTTTTCACGCCCTTTCCAGGTGTGACAGATAGGAGTGAGTTTATTTCAGATCAGTCATTAAATGTGCTATCGTTATTGTTTATGTGCCTCTATGGAGAAACAGTTTTTTTGCCATGTGCAGCAAACCTACTACAGGCATGTCTGCTGGACTGGGGATCTGAGGATCTGAAAGAATGTGATAGACTACAGTCTAACGCTATAGACAACTTTATCCCCATTTCAGTTATACACGAATGAGACAAAGAAAGCAATGACCCAAGGAAGGTTATTTGAGTTTAATAATAATACTATTATTAAATAATAATAATATTTGAATTTTATAAATGTGTACATTGACTCTCCTCAACCATCGGAGTATAAATTGTCTGATGCTCTGAATAAAGTTGGCTATTACATGAGAAAAGAAGCAATGTGATCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTTCCCCCACCCTCTGTCCCCTCAG
Seq C2 exon
GTCTTCCTGGAACTCTCCAAGGAACAGGAGCTGGATGATTTTGAAGAGGAACTCGATCCCTCAGTGAAGTGGAAGCTCCTCCCACAGGAAGAGGCTTAACACTGAAATTTTTCGCTATGGCTGTTTTTTATTCTCTAGCTGCTTAAAGTAATCTTGTCTTGAATGCTACATAGCCATTGTAGATGAGTATACCATTTGACCATGGAGGTAGAAGGTGCTGATTACATCACGAGTGTACAGCTCTTATGAATGGGATTAGGATTGTGAGGGAAAAAAAGCCATTAAAGCTATTATCTCACGCTCTACAATTTTTCTTTGTAATATCGTCATTTTAAAGCACATTAATTGTATGCATTCCTGAATTTAACAGTGACATTCCAGTATATGAAGGATACCTATCCTCTATTCTGTCCTGTCTCAACATCTTCCCCTCATCACCCTTCATAGCCCCTTATGTCCTTCTTTCTACATTTCGTTTTGCACGTATTTCTACATATAAAAGAAAGCATATCCTTCCTGGAGTATTGTGTCTTAATTTGTTTTACATGGCGTCCTCCAGTTCTATGTATTTTCCTTCAGATAACAGAATTCCCTTCATTGTCACAGGTTAATGATACTTCATTACATTTCTTTAGACCTTCGTTTGTTGATGGGTTTCTAGACTGATTCTTTATGTTGTATATTGTGAATAGCACCACAATAAACATGAATTTGCAAACAGTTCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCTGGAGGAGTACAGCC
R:
AGCGTGAGATAATAGCTTTAATGGCT
Band lengths:
346-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]