HsaINT0000443 @ hg19
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67144148-67145229:-
Coord C1 exon
chr17:67145174-67145229
Coord A exon
chr17:67145067-67145173
Coord C2 exon
chr17:67144148-67145066
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTTATTTTCTCTTACTTAGGTA
3' ss Score
10.61
Exon sequences
Seq C1 exon
TGAAACAGACCTTCAACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAG
Seq A exon
GTGGGTTTTCATTGAACGAGTGAGCACCATCCAGATGACCTCTGTGTGAATCCATCTTTCAGACACACCCTGACATTTTTGTATCTTTTTTATTTTCTCTTACTTAG
Seq C2 exon
GTATTCTTAGAACTCTGTAAAGAGCAGGAGCTGGGAAATGTTGATGATAAAATTGATACAACAGTTGAATGGAAACTTCTCCCACAGGAAGACCCTTAAAATGAAGAACCTCCTAACATTCAATTTTAGGTCCTACTACATTGTTAGTTTCCATAATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAACATTTAATAAACATTCAATAATGATTACAGTTTTCATTTTTAAAAATTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGTAGACAAAATTAACAAAATCAGACATGTTATTCATCCCCAACATGGGTCTATTTTGTGCTTAAAAATAATTTAAAAATCATACAATATTAGGTTGGTTATCGGTTATTATCAATAAAGCTAACACTGAGAACATTTTACAAATAAAAATATGAGGTTTTTAGCCTGAACTTCAAATGTATCAGCTATTTTTAAACATTATTTACTCGGATTCTAATTTAATGTGACATTGACTATAAGAAGGTCTGATAAACTGATGAAATGGCACAGCATAACATTTAATTATAATGACATTCTGATTATAAAATAAATGCATGTGAATTTTAGTACATATTGAAGTTATATGGAAGAAGATAGCCATAATCTGTAAGAAAGTACCGCAGTTAATATTTTCTTTAGCCAACTTATATTCAATGTATTTTTTATGGATCCTTTTTCAAAGGTAGTATCAGTAGGCATAGTCATTTTCTGTATCTTTTCACCTCACAGTTCATGAACATTTCCCATGTCATTATAGCACTTTTGTGTTATATAATTGCTGCATTAATGTTATAGCTGTATTGATGTAATACCAGAGTTGTTACGTTCGGGTTATATGCAAGTTTATTTCTTAGAAATAAAACTTTGATGGACTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-ABCA10:NM_080282:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACAGACCTTCAACCTGGA
R:
ACTGAAGTAAAAGGAAACATTCTTGT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)