BtaINT0010869 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:62007563-62008054:+
Coord C1 exon
chr19:62007563-62007618
Coord A exon
chr19:62007619-62007736
Coord C2 exon
chr19:62007737-62008054
Length
118 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTTATTTTCTCTGACTTAGGTA
3' ss Score
9.91
Exon sequences
Seq C1 exon
TGAAACAGGCCTTCGACCTAGAAGAATACAGCCTTTCCCAGGCCACCTTGGAGCAG
Seq A exon
GTGAGGTTTTCAACCCTCGAGCATCAACCTAGGGCATCTTTGTGTGAGTCTCAGGGCACCCTCACCTTTCAGAAACACCCTGACATGGTCGTTGCCTTCTTTATTTTCTCTGACTTAG
Seq C2 exon
GTATTCTTAGAACTCTCCAAAGAGCAGGAGCTGGGGAATTTGGATGATGACGTGGATACGACAGTCAGATGGAAACTTCTGCCGCAGGAAGAGTCTTAAGACCCTGAACCTCCTCGTGCCGGATGTTAGCTCTCACTGCATCCTCAGTTCCCATAACTGTAGAAGAAGCTCTTGTTCTTGAAGTTAACACAGCATTCAGTAGTTCAGACATTCAATAACGGTTAAGGTTTTTATATTTTTTTATTTGATGTGGACCATTTTTAAAGATCTTATTGAATTTGTTACAGTACTGCTTCTGTTTTACGTTTGGGTTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACAGGCCTTCGACCTAGA
R:
GCTGTGTTAACTTCAAGAACAAGAGC
Band lengths:
249-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development