RnoINT0010505 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98412263-98412866:-
Coord C1 exon
chr10:98412811-98412866
Coord A exon
chr10:98412362-98412810
Coord C2 exon
chr10:98412263-98412361
Length
449 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCTTTCATTCTCTTTTCCAGGTC
3' ss Score
12.98
Exon sequences
Seq C1 exon
TGAAAGAGAACTTTGACTTGGAAGAATACAGCCTCTCACAGTCCACTCTGGAGCAG
Seq A exon
GTGGGTAATTTTTAGTGATTTTACATAACCCTAAAATATTAAGTTAAAACAGGAAAGAGGGATCAACAGATAAAGCTCTCTCTGAGGAAATGTGAGGACCACAGTTTGAATCTCTAGAATCCATAGAAACCAAGTAGGCATGGCTGACTCCTGTAGCCTTAACGGCACGGAAGCAGCTGCCTAGTTGGACCGGCTGATTGCAGAGCCCTAGCTTCAGTGGAGTGCCCAGGCCTCTAGAATTAAGGTCGGAAGAGAAACTGAACAGGCGCCTGAGATCAACTCCAGGCTCCCACGGATCCCAGCATTCACTGTACCAATGCACAGGTGGACGGGAATCCACACCTGCATCCACGTGCAAAGAGAGATCCAATAAGCACAGGGAGTCCATCACCTGCAGCTATGGAGGCAGTGTGGTCTGCCTCTCACTCTTCTTTCATTCTCTTTTCCAG
Seq C2 exon
GTCTTCCTGGAGCTCTCCAAGGAGCAGGAGCTGGGTGATTTCGATGAGGAAGGCAGTTCCTCAGTGAAGTGGAAGCTCCTCCCACAGGAAGAGCTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]