GgaINT0127867 @ galGal4
Intron Retention
Gene
ENSGALG00000004333 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr18:8232456-8233414:-
Coord C1 exon
chr18:8233359-8233414
Coord A exon
chr18:8232823-8233358
Coord C2 exon
chr18:8232456-8232822
Length
536 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CTCCATGATTCTAATTCAAGGTC
3' ss Score
4.83
Exon sequences
Seq C1 exon
TGAAATACGCCTTTAACATTGAGGAGTACAGCTTTTCTCAGGCAACTCTGGAACAG
Seq A exon
GTATGTTGGAGCAGGCAGTGTTCCATGGATGTGACCATGCCATGCTGTGGCCCTGCTGGTTTTCTGGTTGGTTTTTCTGGGGCTGGAAAGAAGCACCAAATATTAAAGTTTGCCACTCGAATCTGCAGCCGTATGTTCTGTATTTGTACAGACTGTCTTGTGGCTGAGTTTGTTCAGGCATAGAATCATGGAATCGTATGGGTTGACAGTTGGACTTGATGATCTAAGTGGTCTTTTCCAACATCACTGGTTTTGTGATTCTATGATCCTGTGATAGGATAAGAGGTAATGGCCTTAAATTGCAGCAGGGGAGGTTCAGGTTGGATATTAGGAACAATTTCTTCTCCAAAAGAGTGGTGATGCAGTGGCACAGCTGCCCAAGGAGTGGGGGAGTCACCATCCCTGGAGGTGCACCTGGACTGTGGGATGTGGCACTGAGGGATGTGGGCAGTGGGATGGGCTGGAGTTGGGCTTGGGGATCTTGGAGGTCTTTTCCAACCCTTAATGATTCTATAACTCCATGATTCTAATTCAAG
Seq C2 exon
GTCTTTGTGGAGCTGGCCAAGGAGCAGGAGGAGGAGGAGGGCAGCTTTGGCACACTGAACAGCACGCTGTGGTGGGACCGGACACAGGAGGACCGGGTGGTGTTCTGAACGGTGATCCCAGCACTGCTGTGCTGGGGGAGCTGCGTGGGAACTTCAATGCTGGGACAGAGCAGGAAGAGGATGGCATTCAGAAACGCTGAGCACTGATATGTGAGGTGTGCTGCAACTGTGGAGCAGGCAGTGAGGCTCCCCAGGCTGCTGGGAAATTCCTGCTCTGCCAGTTGATTCCCGGTTTGCATGGAGGGAGGAGATGCTACTGGGATGGCCTCTGGTCCCCTGGGGCTGGTGGTTTAGCACAGCAGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333:ENSGALT00000006907:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTACAGCTTTTCTCAGGCA
R:
CCAGTAGCATCTCCTCCCTCC
Band lengths:
354-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]