RnoINT0010306 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98576039-98577158:-
Coord C1 exon
chr10:98577103-98577158
Coord A exon
chr10:98576353-98577102
Coord C2 exon
chr10:98576039-98576352
Length
750 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TCCCCTTTTTCCTCTGGCAGGTT
3' ss Score
11.63
Exon sequences
Seq C1 exon
CAAAACACACTTTTGCCATTGAAGAATACAGCTTTTCTCAAGCAACCCTGGAACAG
Seq A exon
GTATTGTAAAGTTAAATTAGAAACGATTACTGTATCATTAAGTGTATCTAGTAGCAATTGCTTAGGTTTACAATGTAGAGACTGATACTATCGGCATTTAAAACTACGTACTTAAAACACAGTTACTCACCTCTTTCATGTGTGGGTGTACAGTTGCCACACGTTTTTGTGAGGACCGGAGGACAACTCAGGTCTTGTGTGGGCTTGACAAAAGGTACTGCCGAGCCATCTCACCATCCCCAAATTATAGTTTAATTGTAATTACAACTTTAGCTTCCTCTTAGTTTTTTGTCCAATTTCATTTTAATTTCATTTTCAATTAAATCTTTAATTGAAAAATCATGTAATTTATATTTATTGGCTACAGTGTGATGGTTTGATATATATGTATACTGTTAAATAACTCAAGTAAATTTTATTTTGTTAAGCTTGAACATCTTTTTGTTTATCTTAGTAAATATTTAAAAGACTCATGGCATTATTTCATATTAGAATACTTTAAATTGTTTAAACATTTTAAAGCTATTTTATGACACTGCTACTTGATATATTAATTAGAAAATTTATTAACCCTCTAACTATGTGTTTGTCTTTGTATCTACTGGACAGAACTTGCTTCGTTTGAATAGCATCAATATCAGCAAACCTCTCGATACTTGTTAGATATTAGTATGGCATTGTATCATTTCTGACTTAGTTAAAATTCACTTGAATGATACAGCAGTCTCCTTCCCCTTTTTCCTCTGGCAG
Seq C2 exon
GTTTTTGTAGAACTTACTAAGGAGCAGGAGGAGGAAGATAATAGCTGCGGGACTTTAAACAGCACGCTCTGGTGGGAAAGAAGGCAGGAAGACAGAGTCGTGTTCTGAATGTCTGCGCTCACCCCGCCTGCTGACCCTGAACTTACTCTTTTTTATTTTGTTTTTCCTTCTTTTATCTTAACTTTGATTTTAAAAGTTTATTACTTGAATAGTCACAAAACATGAAAGCACTTGGAAATTTCCTAAACTCCTTAATTTATGCACCATGGTTATTTATGTGTCTGGGTTTTCTTTAAATAAATGTGTGTGTAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACACACTTTTGCCATTGAAGA
R:
ACCCAGACACATAAATAACCATGGT
Band lengths:
343-1093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]