GgaINT0127279 @ galGal3
Intron Retention
Gene
ENSGALG00000003144 | TRIM25
Description
NA
Coordinates
chr18:6288041-6288461:-
Coord C1 exon
chr18:6288396-6288461
Coord A exon
chr18:6288087-6288395
Coord C2 exon
chr18:6288041-6288086
Length
309 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TTTTTTTTTTTTTTTTCCAGAAG
3' ss Score
10.91
Exon sequences
Seq C1 exon
CACGTACCCACAAAGACAAAATCCCTCACCCAACTAAAACCACTCTGCTGGAGGAGACAGATACCC
Seq A exon
GTAAGTAGTGATTAGAAGCAGTCTCTAACATCTTGATGGGCAGATTGCTTACACTCTAAGGCTGCCACTTCCCCTGACCTGTTCCAGCCTAGAGTAGAGATTAAGCTCCTTCTGGGTTGATGACCCTCTGAAATAGGAGGCAAATTGTAGGTTGTGTTTCTTGCATAGCATTCCGGTATGGGTGGCTTCAATGTGCTAGACTGTCAGCTTTATCTACTGCTGCAGTTCCAGAAGAGCCATGATGATGACATTACAGTTGGCAAAGAGTAAACTAACAGTTACCTTCTTTTTTTTTTTTTTTTTTTCCAG
Seq C2 exon
AAGACAAAAGGAATCCTGTTAAACTTGGTAAGTTCAGACGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003144:ENSGALT00000004971:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]