MmuINT0165049 @ mm10
Intron Retention
Gene
ENSMUSG00000000275 | Trim25
Description
tripartite motif-containing 25 [Source:MGI Symbol;Acc:MGI:102749]
Coordinates
chr11:89013476-89015190:+
Coord C1 exon
chr11:89013476-89013538
Coord A exon
chr11:89013539-89015166
Coord C2 exon
chr11:89015167-89015190
Length
1628 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
TGAAAATCTTTCCTTTTCAGAAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTAACAAGGGAGACCAGACACAGTCCACTTTTAAACCCGTACAACCTTCGAAGAAGACCATTC
Seq A exon
GTAAGTAGCCCCCCGTTTTTTTTCTGGTGTCCGTGTGGCTGTGGCTGGCAGATGCATGGTTGAAACTGTCACAGGGGCTACTGAAGCTTCTAGATGGTCACAGACCATCTCAGTTTTTCACACGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCACTGTGATACACATGTGGAAATCGGGAGTCAACCTTGGGTGTCAGTCCTTACCCTCCACTTTATTTGAGGCAGGGCCTCTTACGTGCCATGGTATAAGTCAGGCTTTCTGGCCTGGAGGCTTCTGGGGATCCTGTGATAGACAGCCATCGTCTTGCTGTATGTAAGACTTCTGGGATTTCAGACGCATGCTAGCCTATCTAACCTTATCTGGGGTCTGAAGATCTGAACTCAGGTTCTCAGGCTTGCATGGCATCTGCTTCACCCACTGAGCCATCTTCCCAGCCCCGTGTTTCTCTCTCTTTCCCCCTATTGCCCTCTCCCAGTGAGCTATAGAAAATGTTTCCCTAATTATCCCTACCAGTGAGAATTTGATTCTACACACGCACAGTGTATATTGGTTTATTTATAAAACGGGTAAGCAGACTGGTGGCGCACACCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTATGGGTTTGAGGCCAGCTTGGTTTACATAGTGACTTCTAGGACAGCCAGGGCTATGTAGAGAGACCCTGCCTCAGAAAAAGAAGAGAAGAGAAGACTTTTTACATCCCACACCTCAAGCATTGGATTTTACCCCTGTTCCCATCCCCTCAACAACAATGGTGTCCCTGTCATTGAGAATGTGGTTATGGAGTTAGGAGTGTGAGTCTCCTTGTCATTCACATTTGGAAAACAGTGACATTGGAGCCCATGGGATTTTAAGAAAATAAGTGATGTTCCCATGGGGACATACCGGTTGTGAGAGCTCTCCATAACCCTTAAGGGAAGCTGTGACTGTTTCCCCAAGGTCAGTATGAAATGGCATCAGGGTGCCCTGGTGCCAGTGAGTGTCGGGAGGATGAGAGGACTCCGTGCGTTGCATTGTTGCTTGTGCCTTGTCTAACGTGTGGGCTGTCGGTATCGGTTCCTCTGAGGGCTGGAACACCTGGTGACCTTGTGCTTTTTTTTTGGATGGAGAAGAGGAGCCCTTGGGAAAGAAAGCAGGGTGTTCTTAAAGCCCTATTGTGATACTTAACCAGCTCTATTTATTTTCTGACTTTCTCTTTTTTTGCTTGCTTTTTTTTCTTTCTTTCTTTTGTAGGGCTCTCATCTACCAGTAGTAAAATGCACAGACCCTAAATGTACAGTCAAATACATTCTGACAAATGAGTTCCATGTCACCATTACCCAAATCAACAGAAACACTTCAGAGAAAATTCCTTCCTCTTTCCTAACAGACAGTGTATACCCACCCACCATGACCCTGGTGAGGGTTCCTACACTTGTTGATGTGTGTTATCAGCCACTGCCTTATAGTTTAAGTTAATCCATCCTTCTTTAACTGGTATGAGTCAGATGTATGCTGGTGAGTGCTACTATGGTCTCTTGTGTGTGTGACAACATGCTTTAAAATATCCTAATCTGAAAATCTTTCCTTTTCAG
Seq C2 exon
AAGAAAAGAAGACCAAGAAAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000275:ENSMUST00000107896:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types