HsaINT0172235 @ hg38
Intron Retention
Gene
ENSG00000121060 | TRIM25
Description
tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]
Coordinates
chr17:56895926-56899180:-
Coord C1 exon
chr17:56899115-56899180
Coord A exon
chr17:56895953-56899114
Coord C2 exon
chr17:56895926-56895952
Length
3162 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CTGAAAACTTTCTTTTGCAGAAG
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTGACCCTGGAGAGCATGACCCAGCGTCCACACACAAATCCACACGCCCTGTGAAGAAGGTCTCCA
Seq A exon
GTAAGTAGCCCCACCCCTGTCTCCATGGCAACAGCATGGCTGTGGCCTCCCCAGGCTCTGGCCAAGTCACTTCCGGCCCATCCCGAGTCACTGTGGGGCCTGGACCTCAGTGGGAAAGAAGTTGGTGGCAGTCCCCACTGCGGGGGGCTGTAGGGCTGTGGCAGAAGCTCCGCTGTCCATCAGCATTGCACGTTTGGGCTGCCTGGAACAGCAAGATGCCTGAGGCTGGCTTGTTTTGAGAAATATTTACTATACCCAAGTCCTTGGGCAGAGCCTTGGGCAAGGAGACTGATGGCGGTCCAGGAAGGGTGGAGGCTAAACCTCCTTGGCATCTCAGCAGTGTTAAGTCTCTGGGTTGTAATGGGCTTCTGCTATTACCATGTTTCTCAACTGTTTTTTTTTTTTTGGTTTCTCACTGTTACCCTCCTCCTGCTCATCCCCAGAACCATTTGAGAAAATTTTTTTCCTAATTACAACCCATGAAATTTTAATACCACCCATCTACTGCATAACTGTTTATGTTTGTGCTTTTACACATAAAAAGAGTAATCTTTTTTACTCCCCCTCCCCCAAGGATCCATTTTTGCCCTCCTAGGGGTACTATCCCCCTCATTGGGCAGGCACCTGCCATTGACATGGGGGTTGAGGAGAAGAGTGGTCCTGTTCTGCAAATGTGGACAATAGTGATATCGAGGCCACAGGATGATTCTGAGTGATGAGGGGACACTGATTGTGAGAGCTCTTTATGAGCCATATACCACTGAGATGTCCATATACCACTGAGATGTCCATATACCACTGAGATGTCCATATACCGCTGACATGTCCATATACCGCTGAGATGTTCATATACTGCTGACATGTCCATATACCGCTGAGATGTCCATATACTGCTGACATGTCCATATACCGCTGACATGTTCATATATCGCTGAGATGTCCATATACCGCTGACATGCCCATATACCGCTGACATGTTCATATACCACTGACATGTCCATATACCACTGAAATGTTAGCTGTCATTGCTTCCCTGAAAAGTTGGTGTGAACCCAGGAGGGCTGGCTGCACACTGCTGGTGTTGGGGGGATGAGAGAGCCAGGGCTTGCTCTTTGTTGTTGTTGCTTGTGCTTAGTGTTCAGGTCACCTGTAGCAGGCAGAGTGTGGTATCGGTCCCCGAATGGAACAGAGTCAGGGCTGGGATGCCTGGTGCAGATGGAGGAGGGAGCCCTTAGCTGGGCCGGAAAACCTCGAAGGGTACTTTGTGTGAAAAGAGGAGTGAAAGAGGAAGTGGAAAGGTACTGTTGACCTGTGTCCTTCCCCAGTCACCTTCCTCTGAAAGCTCCTCCCTTAGTATGAATGAGGTAGGGATGCCGGCCAGCAGGCAGGTGTGTTCCCCAGTGAGGTGAGGTCCTCATGTCACAGCAGAATGACACCCTGGAGAATAAAGTTCGGGAATGAATCAAGGCTCCTCTAGGCTGAAATGGGGAAATAGGGGAGGGGGTATGGAGTAGTCCCAGTGCAGAGAGATGTCTAAGGGTAGGTGATGAGGGAGGTGCCTGTGCCCTAGATTGATGTCACAGCCTGGGCCTCCCAAGATGCTGGTCCACAGGGAGTGGGTGGGAAAGTGGCAGAAGGGGAGGAAATGGGAGAGTGAGCGACTGTGAGTGATGTGACTTCGAAGTAGGAGAAGCGGTAGCAAGGGGGCTTTGTGGTGTGATGGGGGTCTGGGGGAGGGAGAGGGTAATAGGAGAGAGCAGGGCTTATCTGTAATGTCAGGTGTCCTGCAGGTGGGCAGGGATATGATTTCAAAAACGCCCCTTTTTGTTCCAGTGTTGTGGAAGGTGGCAAAGAAGGAAGCTGGGATCTTCTAGCCCACTTGAGTGGACTTTGGACTCACCTGGAGGGCTTGTACATCACAGATTGCTGGGTCTCACCCCCAGCCTTTATGATTCAGTGGCTCTGGCTTGGGGCCCAAGAATTTGCATTTACTATTTTTTAAGAGACAGAGTCTCGCTCTTTTGCCTAGGCTGGAGTGCAGTGGTGCGAACAGAACTCATTGCAGCCTCGAACTCCTGGGCTCAAGTGATCCTCCTACCTTAGCCTCTTGAGGAGTTAGGACTGTAGGCATGTGCCACTAAGCCAGGCTAATTAAAACAATTTTTTTTTTTTTGTAGAGACAGGATATTGATATGTTGTCCAGGCTGATCTTGAACTCCTGGCCTCAAGCAATCCTCCTACCTCAGCCTCCCAAATTGCTGGGATTACAGGAGTAAGCTACAGTGCCTGACCAATAATTTGCATTTCTTAGGGGTTCTCTGGTGATGTCACTGCAGCTGGCTTGGGCACCAGACTTTGAGAACGACTATTTTAGCCAAACTCAGTTCCTGTAGGTAGACACTCCAGATATTTTTAAAAGACTTGGCAAGCATTTTTTTTTTTTTTTGAGACAGGGTCTCATTTTGTTGCTGAGGCTGGAGTGCAGTGGCAAGAACACAGCTCACTGCAGCCTCATCCTCCTGGGCTCAAGCAATTCTTCTGCCTCACCTCCCAAGTAGCTGGGACTACAGGTGTGTGCCACTAGGCCTGGCTAGTTTTTTCTTTTTTTTTTTTTTTGTAATTTTGTAGAGATGGGGTTTCCCCATGTTGCCCATGCTAGTTTCTAACGCTTGAGATCAAGTGGTTCCTGCACCTTGGCCTCCCAAATTGCTGGGATTCCAGGCATGAGCCACCATGCGCCCAGCCCTTGGCAAGCATTTTTTTTTTTCTGATTCCCTATTTGGTTTTTGTGTTTTTTCCTTTATGGAAATATAATTTACCTGCAGTAAATCTCTTTTTTCCCTGCAGTAAATCTTAAATGTGCAGTTAGATCTATTTTGACAAATGCATACATGTGTTACCATTGTTCAAATCAAGATAAAGAATTTCCCTTTCTCCAGAAAATTCCTTCATGCTCCTTATTAGTCAGTCCCCGCCCCCACGACCGCTCATGCTGGTTTCTATCACTATAGATTCATTTTGCCTGCTGACTCCTTCTGTTTTTCAAATTAAAACATCCTTTTATTTGTCTGGGTCAAATTCATGCACATGAATGTTATTATTTTGAAAATGTCATTGTGTTGTGCCTTAAAAGAAATTAAATCTGAAAACTTTCTTTTGCAG
Seq C2 exon
AAGAGGAAAAGAAATCCAAGAAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121060:ENST00000316881:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains