RnoINT0155759 @ rn6
Intron Retention
Gene
ENSRNOG00000002341 | Trim25
Description
tripartite motif-containing 25 [Source:RGD Symbol;Acc:1594396]
Coordinates
chr10:76357916-76359734:+
Coord C1 exon
chr10:76357916-76357978
Coord A exon
chr10:76357979-76359710
Coord C2 exon
chr10:76359711-76359734
Length
1732 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TAATCTTTCCTTTTTTTTAGCGG
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTAACGTGGGAGACCATGCGCAGTCCACATCCAAACCCACACGCCCTGCGAAGAAGACCGCAC
Seq A exon
GTAAGTAGCCTCTTGTTTTTTAGTGTGGCTGTGACTGGCAAGTGCTTGGTTGAGACTGTTAGAGAGGCTACTGAAGCTTCCAGATGGTCACAGCCCATCCCAGGTTTTCACAGTTGTGTGTGCGTGCATGCTTATGTATGTATGTAAGCATTCATGTATGTAGTGTATACATGTATGTATGCATACATATGTGTACACATGCACCATGGTGCACATGTAGAAATCAGAAGTCAGCCTTGGGCATCGGTCCTTAACCTTCCACCTTGTTTGAGGCAGAGCCTCTTTTGTGCCCTGGAACAAGGCAGGCTTGCTGGCCTGAACGCTTCTGTGATGAACAGCCATCATCTTGCTGTAAGACTTCTGGGATTTCAGATGCAAGCTAGTCCATCTAACATTATCTGGGGTCTGAAGATCTGAACTCAGGCCCTCAGGTTTGCGTGGCAACTGTTTCACCCACTCAGCCATCTTCTGAGCCCTATGTTTTTCTCTCTTTTCCCCATTGCCTTCTCCCAGTGAGCCATAGAAAACATTTCCCTAATTGTCCCTACCAGTGAAAATGTGATCCTATACATACACAGTATATTATTAGTTTATTTATAAAATGTGTAATCAGTAAGCAGTCCGGGGTGGCTCATACCTCTAATCCCAGCACTTGGGAGGCAGAGGCCGGTGGATCTCTGTGAGTTTGAGGCCAGCTTGGTTTACGCAGTGAGTTCTAGGACAGCCAGGGCTATGTAGAGAGACCCTGCCTCAAAAAAGAAAAAGAAAAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACACTTTTTATACCCCACACCTCAGATTTTTTGCCTCCGCTCCCCTCCGCCAACAACAGTGGTGTCCCTGTCATTGAGAATGTGGGCGTGGAGTTGGGAGTATGAGTCTCCTCTTCTCTCACATTTGGAAAACAGTGACATTGGAGCCCACGGGATGATAGTAAGTGAGGTTCCCACGGGACACACTGGTTGTGAGGACACTTCATAACCATTTAACGGGGAAGCTGGGACTGTTTCCCCAAGGTCAGTATGAGATGACATCAATGCCCTGAAGATGCCCTGATGTTAGTGGGTGTCAGGGGAGTGAGAGGGTTCAGTGTGCTTTACTTGTTGTTTGTCCATAATGTGTGAGTCGTCTTCAGCAAACCACTGCTGGGTACCGGTCTCTCTGAGGGCTAGAACATTTGGTGACAGTGTGCTTATGGATGTAGGAGAGCTCTTGGGGATGCAGGATGTTGTTAAAGCATTATTGTGATACTTAACCAGGATTGTTTATTTTCTGATTTCCTCCTTTTTTTTTTTTTTTTTTGCTTGCTTGCATTTTTTTTCTTTTGTAGAGCTCTAATCTCTACAAAATACACAGATCCTAAATGTCCAGTCAGATATATTCTGACAAATGAGTTCTATGTTACCATTTCCCAAATCAACATAAACACTTCCTAGAAAATTTCTCTCTGTTTCCTAATAGACACTGCATACCCACCATGACCCTGGTGGGGATTCCTATACTTGTAGATGTGTGATATCAGCCACTGCCTTATAGTTCAAGTTAGGCCATCCTTCTTTAGCTGGTATGGGTCAGCTGGTATGGTGAATGTTACCATGGTCTTTTGTGTGTGGCATCATGCTTTTAAATATCCTAATCCTATAATCTTTCCTTTTTTTTAG
Seq C2 exon
CGGACAAGAAGACCAAGAAAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002341:ENSRNOT00000055674:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]