GgaINT0127383 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1118409-1120100:+
Coord C1 exon
chr18:1118409-1118597
Coord A exon
chr18:1118598-1119864
Coord C2 exon
chr18:1119865-1120100
Length
1267 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
3' ss Seq
AGGTTTCTCCTTTACCCCAGGTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTTGGAGGGCTTGCTTCTGAGAACGTGAGATGGGCCGAAGCTGTGAAGGACTTCAAACGGCAACAGAGCACTCTGTGTGGAGATGTGCTGCTGGTTACGGCGTTTGTCTCCTACCTGGGGTACTTCACCAGGAAATACCGACAAGACCTCATGGATAGAATCTGGAAGCCGTATTTGCAGCAGTTAGAA
Seq A exon
GTAAGCCCTGCTTTCTCTGAAAAGCAGTTGTCACTGGGCATAACATGGCCGTGAATTGTTGTCCATGGGGGATCCTCCAAGTAAGTAGCACCCCTGTGGCCTCACCAAGTTGCACTGAGGATCAAGTCATAGCCATGCTTGTTTCCTCTTTGGGGAAGACACTGTGGTCTCCTTGCACCATGCAGGTGGTCCCATTGCCCTATGGACAGTGGAGAAGCTCCAGAGCAGCATCCCAAACATGGAGACCAGTGTCAGTTTGTGCAGGAGTCAGGGACGGCCTACAGAGGAGATAGTATGGAAAAGAGGCTGCTTGGAAGAGGCAGAGCTCACTGCCAGTGCTTTGGTAGGCTTGGAGAGACTCCAGATGGTACCTCATGTAAGACATGAGCTCTGTTCACACTGGCCATGCCTCTCAGCTCCTGAGTTTCACCCGTGTCTTGGTGAGCAAATGGAAACCATTGTGCTTCAGACTTGGTAATATTTCACTGATTTCCTACTGTGTACTTAATACATCAATAAATTAACATGTGCTCAGTCTCCTGCAAGACTGAGCTTTTGCACATCATTACCTAACTGGATGTTACAAAGCCTGGTGAAATGCCAAGAGGCTTTTATGTAAGGTCACAACTTGCAGTGGTGCCCAAATCAAAAGCTGAGAAAATGACCTTAGGATGAGAGAGAAAATCATTCTGTGTTCCTTAATACTAAACCAAAAACTTGGTTAAGAAAGGAAATGTTCCAAAAAGGGCCTGACTTGGTGCTTAGAGATTTCACATAAGTTACCTCTATTTCCATTTGAAAATTAACGACCCTTTCTGTGCAGATAACTGGCACAGATAACTTTCTAGTTGTCGCACTCAGAAGTGGCCTCCCATGTCAGAGAAGTGTTTCTGGAACTGCAGATGCCGTTTTGCAGCACAACAGCAGGCTGATGAGGGTGTTAATTATATTCTTCTAAGCTGTCATCTCAGAGCGCTCATACACAGCAGTGTGGTCTGATCCTGGCTGGGTGGGCTGCGGCTTTTCAGGGCTCTCAGCACTCTGCGGGCAAAAATCTTTGGGATCCATGCATAATTTATGTTCATTCACAACAGGAGTGGAAAGCACTTAATATTAGATCAAAACTACCCAGTAGAATGGTAAAACGTTGATAAACAAAACTTCTCAGTTTTTAATTAAGCTAAATTTGCTTGAATTGTTTCTCTCGCCCATCCCTGTGTATGTTACAAGCCATGCTCACTGCTGACAGGTTTCTCCTTTACCCCAG
Seq C2 exon
GTGCCGATCCCTGTAACTCCATCCCTAGACCCTCTGACCATGCTGACGGATGATGCTGATATTGCAGCTTGGCAGAATGAGGGGCTGCCAGCCGATCGGATGTCCACTGAAAATGCCACCATTCTGACCAACTGCGAGCGTTGGCCCCTCCTGGTGGATCCCCAGCTGCAGGGAATCAAATGGATCAAAGCAAAGTATGGCGAAGACCTGCGGGTGATCCGAATTGGGCAGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(16.9=92.1)
A:
NA
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAACGGCAACAGAGCACT
R:
CGCAGGTCTTCGCCATACTTT
Band lengths:
350-1617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]