HsaINT0050090 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11871598-11875184:+
Coord C1 exon
chr17:11871598-11871786
Coord A exon
chr17:11871787-11874948
Coord C2 exon
chr17:11874949-11875184
Length
3162 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
TGGTGTTTCTTCTTCACCAGACT
3' ss Score
7.07
Exon sequences
Seq C1 exon
GTTGGAGGACTCGCTTCTGAAAACGTGAGGTGGGCAGATGCCGTGCAGAACTTCAAACAGCAGGAAAGGACGTTATGTGGAGACATTTTACTTATAACGGCTTTCATTTCCTACCTTGGCTTCTTCACAAAGAAATACCGGCAGAGCCTCCTGGACAGAACTTGGAGGCCCTACCTGAGCCAGCTGAAA
Seq A exon
GTACGTATGGCCTGAATTTCTCCCGACCACATCAGCCTCTGGGCACCAATGGGAAGACATCACGGTCATAATTCGCATCCTCTGGTGTCCTCCTGCACACTCATCCCCACCACCCCCTGAGCACCAGGTGTGAAACCTGCGTACCCGTGTCCTTCCACACTGCCTTGCATTGCTGCCCACTGCCCTCCAGGCCACCTGGGGGCAGCACCTCTCCTCTGAATGTAGTCCTCCATGGGAACACTAGTCCTCTTCCCCGCGGGCTGTCTCCTAGCAATCCTTAAAGCTGTGAAACCTGAGAGATAGAAAAAGAACCATTTTCGTCTCTGATCTCCCCACTCCAGAGCCAGACTTCATAGGAGCAGTCAGGGGACGTTCCATTTCCCAGATCCTACATTGCACCTTGTTACTGGGCCCTAAAGCTACACAGCTTGTGCCAGTGACTCACAGATATCCTTCGTCGGCTTCCGTCCTGCATAATCCCATGAACAGCTGCTCACATGCTTCTTATTTGGGCAGTTCAGCTTGTCCTCCTCGTGTGGCTAGGTGGATGTTACTCCCAACCCATCCCTTTACATCACCCGCCCCCCACCCCCTGCAATGTAACTAAATGGAGAAATACTGGTTTCCCATTAAAGGGGATTCAAAGCTATACTTGGACGCGAGCATCAGAAGTTCTAATATTTTCTTGGCACTTTCGCATCACTTCTAGCAACCCACAAATACTTCCTGTGTATTTAGTGTGTCCTACCACTCCACTATACAGGAGGCACACAAAACGTTCAAGACCGGGATACCTTTGGCAAGTTCCCAGTCCACTTGAGGAGATTAGGCTCATAGAAGTCAGCGAAGGTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACAGTGAAACCACGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGAAGCTTGCAGTGAGCCAAGATAGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAACAAACAAACAAAAACAGTCAGTGAGGGTGAAAGTCAGCCCCAAATTTCACAACATAAGGTAAAAGCTGTATTCCAGATCTATTTGTAAGTAGAACCTTAGAACAAAAACTCTTTCTGTAGTGATGATTGTTTTCTCAGATCAGCTCATAAAACCCTGCTCACCTGACAATTAGCTGAACCGTAGTTTTTAAAATGCTAGCAAATAAACAAAAAATAAAGCAGCTGTTTGACTCATCCTAAACACTTTTGGAAAAAGGAAATTGTTGAAGGAACCATCATTAACTGAGTGAATGAAGAAGAAGAGCTCAGTAGCAGCTTAGTGAGGATTTTTCTGGCTTTGTTTGGATTCTTAAGCTTTTTTGTGTCATGGACGTCTTTGGCAGTCTGGTGAGACCTACGGATTCTTTCTCAGAATAATGATTTTGACACGTCAAATAGAATGCATGAGATTACAAAGGGAAAAAATATATTGGAACACAATTCTGGTCCCAGATAAGAATCCCCAAGGGGCTGATTTCCCTTCAGAGGTTTGCTGGATACTGTAGTACTGGCCATTTGTGCCCTTGTTAGATACAATTAAGAGGATGGGAGATGGTTTGGAGAGGTTTCCCTGGGATAATTGGGCAGAACAAACTTCAGAGAGGAGTGAGATGAAGGAGTTAAAAGGGTATTTGTCTAAACCTCGAAAGCATTATGCTAAGTGAAAGTAACCAGACACAAAAGGTCACATATTGTAGGATTCATTTATAGTAAAATATCCAGAATAAGAAAATCCAAGGGGACAGAAAACATATTCATAGTTTCCACGAGCTGGGGGTAGACAGAAATTGCGGGGGCTGTTGAATGAGTATGGGATTTGGGGGTGATGAAATGTTTTGGGGGTAGAGCCGATGGCTGCATAATGTTATGCATAGACTAAATGCCACTGAATTGTGCACTTTAAAATGATTAATTTATTTCATATCAATGTTACCTTAATTTAAAAAAATATATATGGGTCATCAATGAAAAAGATTGCCTGTAAAAAAAATTAAGTGAGCCCGGCGTGGTGGGTCACGCCTGTAATCCCAGTATTTTGGGAGGCCGAAGCAGGTGGATCGCCTGAGGTCAGGAGTTCGAGACCAGCCTGTCCAACATGGTGAAACCTCGTCTCTACTAAAAACACAAAAATTAGCTGGGTGTGGTGGCAGGCACCTGTAATCCCAGCCACCTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGTTTGCATGGAGCTGAGATGACGCCATTGCACTCCAGCCTGTGTGACAGAGCAAGATTCCATCTCAAAAAAAAAAAAAAAGAACTGAGTGAGCAGAGAAAGGCTAACAAAGAAGAAAAGGCAGTGTCTAGGGCACACACAGGAGCCCTGAAGGGGCCTAAGAGAGGCCACAGGCAAGTTCTCAGACTGATAAATACTCGGCAGCTTCCCCACAGGCACCAGCAGGCAGGTTTGCAAGAGTCCTGCAAGTGAATGGGGTGTTTGGGGAAGAGAAAAAGAAAACCCGTCCAGCCTCTTGCAAGCTGGTGAAACAGAGGAGAGGAAAGAGTGGTTTGTGCCGGTTGGTACAGACAGGAGCAAACCCACTAGGCATGGGACCTGGTGCTGGTTCATGGAGCGTGCACAAGAAACACAGACATATAGCAGAGAAATAACACTGTTAACATGGGTGAGAGTGTGTAGGAGGTCGTAGATTAAAATACAGATAATATAGTAGAAACTTGACTTAGGTAAAGATACCGAAAAACAAAGAATCAGTCACACGAGTTGAATTTCTGCAGTTATTCATCCATGGAGGGGAAAAAAAAAAGCTATCAGGACTTTAATAGAACCTGCTTCCAGAAATAATCACACAGCCAGAAAGGCATTCTTCAGTGGGATGTTGATCTTGCTTTTAAAGGAGTTGTGTCATTTGGTGAGTAACTGCATTCATCCCAGCTGAGAATGTCTGCTTCTGTTCTGAGCGTGGGGTGGTGTTTCTTCTTCACCAG
Seq C2 exon
ACTCCCATTCCAGTCACCCCAGCCCTGGATCCCCTGAGGATGCTGATGGATGATGCTGACGTGGCTGCCTGGCAGAACGAGGGCCTCCCAGCCGACCGCATGTCCGTGGAGAATGCCACCATTCTCATCAACTGTGAGCGCTGGCCACTCATGGTTGACCCTCAGCTACAAGGCATCAAATGGATCAAGAATAAATATGGTGAAGATCTCCGGGTCACGCAGATTGGTCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(16.9=92.1)
A:
NA
C2:
PF127772=MT=PD(2.9=6.3),PF097314=Mitofilin=PD(1.2=1.3),PF127812=AAA_9=PU(61.3=82.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development