RnoINT0049280 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52416924-52420560:-
Coord C1 exon
chr10:52420372-52420560
Coord A exon
chr10:52417160-52420371
Coord C2 exon
chr10:52416924-52417159
Length
3212 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
GAGTGTCACCTCTCCATCAGGTT
3' ss Score
5.99
Exon sequences
Seq C1 exon
GTTGGAGGACTTGCTTCTGAAAACGTACGGTGGGCAGAGGCCGTGCAGAACTTCAGACAGCAGGAAAGGACATTATGTGGTGACATTCTGCTTACTACAGCCTTCATTTCCTACTTGGGCTTCTTTACCAAAAAGTACCGAAAGAGCCTCATGGATGGGACCTGGAAACCCTATCTGAGCCAACTGAAA
Seq A exon
GTACGTATGGCCTGAATTTGTCCTGTGTGTGCCATTGCGATCCTATGACCATAATAACTCAAACCTTCATGTACTCAAAGCTTCATGTATGCACTGCCACTCCAATCTGAGCATCAGGCATGGGACATACATGCAACATTCCCTTAGTATATTCTTACCCTGTAGTCTCATCAGTTCCCAAGCACTACCCAAAAGTTTAAAGTGTCCTACATGCCACGTCAGGGGAATGCAAATGCCATCATCCCAGGCCAGAATGGCTTCAGTATGTCACAGGACGATAGTTAGGTCCACTGGATCTTTAGCAAGAAGAGTGAGCACAACTCACATTGTACCCTTAGGTGTATCCCAAAGTCCATTCACAATTATAGCCCTAGAATGGAAACTATATTTCCATATAGTGATGGGTGAGTTTTCCCAGATCAGCTCATAAAATTCTGAGCACTTGATAATTTTGACGGACTGGTTTAAAATGGTTACAATCCTGGGAATAGCACAGAGACTAGTTCATCAGTAACTAGTGGCACTAGTTGTGTTAACTCTTTCGACTGACAGCACTAGTTGAACTGTGATATCATTCATCATGAACTCATGGAGGAAGAAGTGCCAATCAGAGAAGATGAATGGCTCTTAGCAGCATAGAGGGGTTGGGCTTGTTGGAGACTCATAAGTGTTTTGTGCCGCACACTCCTTTGGCGGTGTCTTAGCCTGTTTTGGGTGCTATAACAGAGTGCTGGAGAGCAGGTGATCAATAAAGAACTGATATTTACTGGTTCGTGATGCAGCAGTCTGGTAAGTCTGCTGCAGACCTCGGTATGTTGACATCCCATTACAGAAGGCAAGAGAGTAAGAGCCAAGGACATAGATGAAACCAAATTCACATCTGTGACCCATGATCACAGGACCTAATTCACTCCCATGGTATCAATGGGAACCATTGATAGGGTAGAGCCCGCAATGAGCTGCTCACTGGGGATTAAGTTTTTAGCACCTAGGTTTTGGGGAACACATTCAAACCACATAAAACAAAGACTGGCAAAGTCTATGAATCCCAGAACAATGTTTTATTCATAAGATTACAGTGAAAAATATGGCAAAGCACATTTCTGGTTTTGTTTTATTTAGTTTTCTCCACAAAGCTCAGGCCTATCTCAAACTAACAATCCCCCTGTCTCTGCCTGGCTACATAAAGCTTCTCCAAGGAAATAAGCCATGTGGTATTCTTATCCTGAGATCAGAAATGTGTTTTAAGCTTGGTAGAGTATCATTTATATGTAACATCTGTGTAATTACAGCAGTTAGGGAGGCTGAGATGAGGAGTGTGAGTTCAAGGCTGGCGTGAGCAACATAGTAAAGATGTTGGAGGGAAGGAAGATTAAAAAAGAGTGTGTCTTAGTTAGGGTTTCATTGCTTGTAAGAGACTCCGAGAACACAGCAACTCTTATAAGGACAGCATTTAATTGGGACTGGCTTACAGATTCAGAGGTTTAGTTCATTATCATCAAGGCAGGAGCATGGTAGCACCCAGGCAAACATGGTGCAGGAGGAGGCAAGAGTTTTAGATCTTCATCTGAAGGCTGCTAGAAGACTGGCTTCCAGACCGCTAAGATGAAGGTTCTAAAGCCCATGCCCACAGTGACATACCTACACCTACTCCAACAAGGCCATACCTCCTAATGCCCTGGGTCAGGCATATTCAAACCGCGGGGTGGGGTGGCGGAGGAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTGATACTATTTTATGGGTCATCTGTTTCCTTCTTTTAACCTTGTTTAACCTTTGACATTGTGACATGATATTCTCACCTATAAATTTCACACTCTAGATTCATGTGATTGAGCTGAAAAAAAAAAAGAAACTCACAAAAATGTCACCATGTTTTAAGTAAGTTGATGACTTTTGGAAGACCACATTCAAAGCTGTCCTGGGCTGCCACTTGAACATACCTAAAGGAAAAAGAAATGGTGTAAATGGTTTTCCTGAGGTAGCTAGGCAAAACTGCAAAAGACAGTTGAATCAAAGAGTTTAAGTGGTGTTAAGTCTAAACCTTAAAACCATTATTCTAAATTAAAGTGGCCAAACACAAAAGGTCACATCTTGTATGATTCCATTTTTATTAAATATCCAAAGTAAGAAAATCTATAGAGACAGAAAACATATTAGTAATTGCCAGGAGCTTACAGTAGAGAGACACAGGGAGGGATTGTTTAATGAGTCCGAATCATCCTTCGGGGCCATGAAAATACCCAAGAGTAAATGGACCAAGCCGAAGGCTCCATAACCCTGTGACTGTGCTATCCGCCCCCCACCCACACACTGAACTATATACCTTCCAATGGTTCATTTTACATTGTGTGAATTTTACCTCGTTTTAAAAGTGCATAAGCCAATGGAAAAGATTGTTTGTAGGAGAATTAGGTGAATTAGGTGTCAAAACAGAAAAACAGAAAGGATTCTTCAGTCCTGAGAGTACATAGAGTGATTGTGGGTGGAGTTCTCAAGGCTGAGGCTGTGCTCCAGGTATGCTTGCTTGGGGGATGGGAGAGAATATGGACAGCCTTGAAGAGAGAAGATTGGGTTAGGGGAAAGGAAGCTTCCCTGGCCCTTTACAAAAATAAATGAGAGGAGAACGTAGTGTGTGAGCTGGTACTGCCACCAGAAAACTGCCTTGAGAAACAGAGAAATATGACAAAGAAGTAAAGATTCACATGGTTGTAGACATGATTAAGATCAGGCTGGCAAGATAGCTCAGTCTCCAAGCCTAACTACCTAAGACAGATCATGGAGACCCACATAGTACAGGGAGAGAGCCAATTCTCCCAAATTATACTGTGACAACATTGACATGCATGCCATGTCATGTGCTCACCCACCCACATACATACAGATGCATGTACATGCAATAAATAATTCTTTTAAAGGCATAAAAAGCATATAAAGGAATGGGACTTAGATGGATATACTAAAGAATAAAGAATTGGTCACAGGATAAATGTCTATTGTTCATCCTTCAAGGTGGTTTCAGCAATAATCACATAACAAGGAAAGCCCACATCAGGAGGATGTTGGTCTTACTTTTATAGGGGTTATGTTATGTAGTTATACTATGGATTCTCCCCCACAGAGGTAGAGTTTTCCATTCAGAGTGTCACCTCTCCATCAG
Seq C2 exon
GTTCCCATTCCAACCACCCCAACCCTGGACCCCCTGAAGATGCTAACTGATGATGCTGATGTGGCTACCTGGCAGAATGAGGGTCTCCCTGCTGACCGAATGTCCATGGAGAATGCCACCATCCTCATCAACTGTGAGCGCTGGCCACTCATGGTCGACCCTCAACTGCAAGGCATCAAATGGATCAAGAACAAATATGGGGAAGAACTCCGTGTCACACAGATCGGCCAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(16.9=92.1)
A:
NA
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]