GgaINT0127418 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:603746-605066:-
Coord C1 exon
chr18:604990-605066
Coord A exon
chr18:603834-604989
Coord C2 exon
chr18:603746-603833
Length
1156 bp
Sequences
Splice sites
5' ss Seq
CGGGTACAA
5' ss Score
2.62
3' ss Seq
TTTGTTGATGACTCTCCCAGGAG
3' ss Score
4.18
Exon sequences
Seq C1 exon
AGGCTAGTGCTGGTGCTGGCAAGAAAGGTGGCAAGAAGAAAGGTTCTTCTTTCCAGACTGTCTCAGCTCTTTTCCGG
Seq A exon
GTACAATACAGAGTTCAATATTTTTTCCTAAGATGAGGAGGAAATTCATTACTTAAAATAGCTTTTCCCCTCCTCCTCTTCCCCCCAACTAGTTGTGATAAAAAAGAAGCCCCGAAGTTCTTGGGCTGTGCTTTGATAGTAAACACACTGTTTATTTACTTCTGCTCTTCCAATCAATGCATGATTTTTGTTCACTTGTCACAAGACAGTGTCTTCAGATGGAACAACATTATACAGGAGACTTCTAAGATACATCTAAAATTTGCATATTTCCTTCAAGTGCCCTCTGCCTTCAGAAACTTTTGTTGCCCTCTAACAGCATTCTTTCTGCCTTCTGGTTTCCTTCATTAATATATCTAATATTTTTTTCATGATTAATGGATCAGCCTCTTATGATTGAAATACCATCACACCGTGGGATGTAGATTTTTAAGATGTATATTTGATAGTTTTTTTTCTCATAACCAAGTCTTGCTGCCTGTCAGCAGCATACATATCTAAACTCTCTTCAAGGCTATTTATTATGATATTCATCCTTCATTTAGTGTTCCCTTCTTAATATAAAATAGTTCCTTTACAGAAAGATGTTGAGACTGTTTTTTTGGAAATATCCCCTGGAGGTACCTGCCTCCCTCCACTAATTATAGGCAATAATAATTTATAAAAACTTACTCAGAGATTAGTTACAAACCAACAATGGGATTAATCTCACCTCATTCTCATCTCACCTTACAAGCAACATGCAACCTAGACATACAATATTCAGCTTGTTATTTTTGTTCTATGTAGTGTGATCCACTTTAAATGCAAACTATAGTATGCTTCAAACTGGCTCACAGAGCTATCTGTATATCTCTCCTGGTACATATAATGGAAGATGGATATCATTTCTATTGAAGGCATTCCACTAGCATCAGAGAAATGTCATAAAATTATATGTTTGAGAGTACAATATCTCCTACAGACAGAACAGACAAATTTTCCACATTAAATGAACAATCATATGTGGAAACTCAGAAAAACTGGTGCAGGTGGCTTCAGTTCAGGATTCTGCAAGCCAATGTTTGTCTGATAACGTTATCTCATTACAGAGGGCTTGAAGCTTACAATGGAGATTATATTTGCTAATATAAACTTTTGTTGATGACTCTCCCAG
Seq C2 exon
GAGAACTTAAACAAGCTGATGACCAATCTGAGGAGCACCCACCCCCATTTTGTACGCTGTATCATCCCAAATGAAACAAAAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]