MmuINT0103459 @ mm10
Intron Retention
Gene
ENSMUSG00000020908 | Myh3
Description
myosin, heavy polypeptide 3, skeletal muscle, embryonic [Source:MGI Symbol;Acc:MGI:1339709]
Coordinates
chr11:67089241-67090276:+
Coord C1 exon
chr11:67089241-67089311
Coord A exon
chr11:67089312-67090188
Coord C2 exon
chr11:67090189-67090276
Length
877 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
3' ss Seq
TTTTTTCTCTTTCCTTTTAGGAA
3' ss Score
13.98
Exon sequences
Seq C1 exon
CGGACGGTGGGAAGAAGAAAGTCGCTAAGAAGAAAGGCTCTTCCTTCCAAACCGTCTCTGCACTGTTCAGG
Seq A exon
GTAGGACACATTTAAGTTAATCTATTATCAGTTCACCCAAGTCACAGCAAAATGAGCAATGTCGAGATCCTAGGCTTGCTTTATTCAAGGGTTAGTCACGCGGCCTGATGGCTCTCTCTGCATGAGATCAATTGACAGTCTGACAATATACAGATGAGGTTTAACAAATGTGGGGCCAGGGTTTGTTCCATTGCGTACTATAACTAGCAGGTCTGGCTGGCTGGGGGCAATGAGCTCTCAGTTCCAATCATCTAGTTGCCTTCAGTATGCCTGCAGTAGCACCCAGGCCCCTGACAGGGACAGACACATTTTCTATGTTAATTTTGGAAACGATTTTGTAGTTGGTGGCCATCTTGCAACCTGGGAGAAAGATGACTGAGGCAGGTCACATTTCCCTGTGCTGGGGACCAAAACTCAGACCTCAGTTTTTTTTTCTTTTTTCATTAATCCATATATAATGAGATTTCTCAAGTATGGAACCCAAATCTAAACACAAAATTCATCTGTGTTTCATATATGCCTTGTACAGGAAGGATGTAGATAATTTCACATGCTATTTGAAGCATATTGCTGTCTTGCCTACATAAGGTGGGATGTTCTATTTGTGTATCATGTTGGTACTCAAAAACAATTTCAGATCTATAGAAGAAAGATTTTAGATTTTAGAGCATTTTAGATTTTCAAGACGGGGATGTCCAAATTATGCAAGTTGTCTGCATCTCTGGGTTTGGGACTATTCAAGGATAGAATTAATTTTACAACTCTTAAGTTGAAGCCATATAGTTTAGTTTTCACCACCATGCATGTATTTGTCTCTGTGGAAGTTTACAGTAGGCTGCCAAAAGAAATGTTTTTTTTTTTTTCTCTTTCCTTTTAG
Seq C2 exon
GAAAACTTGAACAAGCTGATGTCCAATTTAAGAACCACACACCCACACTTTGTACGCTGTATAATACCCAACGAAACCAAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020908:ENSMUST00000108689:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types