HsaINT0107727 @ hg38
Intron Retention
Gene
ENSG00000109063 | MYH3
Description
myosin heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:7573]
Coordinates
chr17:10641285-10642310:-
Coord C1 exon
chr17:10642240-10642310
Coord A exon
chr17:10641373-10642239
Coord C2 exon
chr17:10641285-10641372
Length
867 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TCATTTTTTTTTTCTCTTAGGAA
3' ss Score
10.74
Exon sequences
Seq C1 exon
CTGACAGTGGAAAGAAGAAAGTTGCCAAGAAGAAGGGTTCTTCCTTCCAAACTGTCTCTGCCCTTTTCAGG
Seq A exon
GTAAGAAAAATACAAGTTTATTTGCTTATAATTGATTTAAGTGACATCTAAATGAGCAATGCTGAGATTCTAAGCTTGATTTATTTGAGAGTAGTAGTGTTGTCTTAATCTGATTACTGTCACTGAGGTGAAGTGACAGATGATAAAATATAATAAATACGGTCTAACCAATGTGCGATGAGAGTATCACTATTATCTTATACCAAAGATAGCTGAGTTGGCTTGTCCGAGTTTCCAGCATAAACTCTCCAATTTTCCTAAAGGACACCAGCAATAGACCTCACGCTCCCAGTGGATCCATCACCTGAGTTGATTTTAGAAAGCATTTTGTACTTGGCGAGCCTCTGGCTCACTGGGAGACAAAAGACAATTGTATCAGTTACTAGCCTACACCTCCAGCCATAGGACCATTGAAAGCCTGAGTTAGGCCGGGCACAGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAGAAGATCGAGACCATCCTGGCTAACACAGTAAAACCCCGTCTCCATTAAACATATGAAAAATTAGCCAGGTGTGGTGGCATATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTAGGAGGAGGAGGTTGCAGTGAGCCAAGATTGAGCCACTGCATTCCAGCATGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGACAGAGTTAAATCATTTCACTATACTTTAGAACTTATGATAAATTTTAAACATAGATCTTATTTCATTACAATGGATCTCTGTCTTCATAAAAACCTACAGTAGGATGGCAAATGTCATTTTTTTTTTCTCTTAG
Seq C2 exon
GAAAACCTGAACAAGCTGATGTCAAATTTAAGAACTACTCACCCTCATTTTGTGCGTTGTATAATTCCCAATGAAACCAAAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063:ENST00000583535:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development