RnoINT0096472 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53633344-53634385:+
Coord C1 exon
chr10:53633344-53633414
Coord A exon
chr10:53633415-53634297
Coord C2 exon
chr10:53634298-53634385
Length
883 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
3' ss Seq
GTTTATTTTTTTTCTTTTAGGAA
3' ss Score
11.51
Exon sequences
Seq C1 exon
CTGACGGTGGGAAGAAGAAAGTCGCTAAGAAGAAAGGCTCTTCCTTCCAAACAGTGTCTGCGCTGTTCAGG
Seq A exon
GTAGGACAAATTTGAGTTAATCCACTCACAGTTCACCTGAGTCACAGCAAAATGAGCACCGTTGAGATCCTAGGCCTGGTTTATTCAAGAGTAGTAATGCTGGCTGCCTGACAGCTCTCTCAGAGTGAGATCAATTGACAGTCTGACAATATACAGATGAGGTTTAACAAATGTGGGGCCTGGGTTTGTTCCATCGTGTACTGTAACTAGCAGGTCTGGCTGGCTGGGGGCAGTGAGTTCTCAGTTCCAATTATCTAGTTGCCTGCAGTGCGCCTGCAGTAGTACCCAGGCCCCTGGCAGGGACAGACACATTTTCTGCGTAGATTTCAGAAACCATTTTGTAGTTGGTGGCCATCTTGCAACCTGGGAGAAAGATGACTGAGGCAGGTCACATTTCCCTGTGTTTGGGACCAAACATAAGACTTCAGTTTTCTTCTTCTTTTTTGATTAATCCGTATATAATGAGATTTCTCAAGGATGGGACCCAAATCTAAACACGACGTTCATCTGTGTGTTTCATATATGCCTTGTGCAGCAAGGACGTAGATCGTTTTACATGGTATATGATCATGTAGGCTGTTTTGCCTACATAAGGTGGGACGTTCGATTTGTGTATCATGTTTGTACTCAAAAAAATTCAGATTTATAGAAGAAAAACACTCCAGATTTTTAGAGCACTTTAGATTTTAGATTTTCAAGGTGGGGATGTCCAAGTCACGGCCGTTGTCTACGTCTCTAGGTTCATGACTATTCAAGGACAGAGTTAACGTCACAACTCTTAAGTTGAAGCCATAGAGTTTAGTTTTCACCACCACGCAACTATCTGTCTCCGTGGAAGTTCACAGTAGGCTGCCAAAGGAAATGTTTATTTTTTTTCTTTTAG
Seq C2 exon
GAAAACTTGAACAAGCTGATGTCCAATTTAAGAACCACTCACCCACACTTTGTGCGCTGTATAATACCCAATGAAACCAAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]