GgaINT0127423 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:599447-602534:-
Coord C1 exon
chr18:602279-602534
Coord A exon
chr18:599690-602278
Coord C2 exon
chr18:599447-599689
Length
2589 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
AAGTGCATTTTTCCCCTCAGGAA
3' ss Score
8.43
Exon sequences
Seq C1 exon
AGAGTCTGTCTTCTGCATCCAGTACAACATTCGTGCATTCATGAATGTCAAGCACTGGCCCTGGATGAAGCTGTTCTTTAAGATCAAGCCGCTGCTGAAGAGCGCAGAGTCTGAGAAGGAGATGGCCAACATGAAACAAGAGTTTGAGAAGACCAAGGAAGAGCTTGCAAAGTCTGAGGCAAAGAGGAAGGAGCTGGAGGAGAAAATGGTGAAGCTGGTGCAGGAGAAAAATGATCTGCAGCTCCAAGTGCAGGCT
Seq A exon
GTGAGTACTACCAGTGTGACTGATTCTACCTAGGCTGACTACATTTTCAAAAGACACATAGGAAGTACAATATAATTGAATTAAGTTGTACTTCATTAAGTGCTGCAGTGAAAAATATAACTAGCTAAAGTAAGAACTGTCAGAAGGCTGCAGTCATGGCACTTCATGACCACATGGATACCATGGGTGAGACATTTCACAAAATCATAGAACGACAGCATATCCTGAGTAGGAAAGAACCCAAGAACGATTGGGTCCAACTCCCAGCTCAGCATAGGATCTCCTCAAATTCAAACCAAATTTCTGAGAGCATTGACTAAACAATTCTTGAATACTGACAGGTTCGGTGCCATGACCACTTTCCTGGGGAGCCTGCTCCACGGCCCAACCACCCTAGTGGTGAAGAACCTTTTCATAATATCCAATCTCTTGATGTAGCTTCATGCTGCTTCATTAGGGACTACTGCTGGTCACCAGTTCTGTTGTGTTGGCAGAGACTATTATCACTTACATTCAGTTTAATTGCATCAGAGCAATTAAGAAATTTTACTTTTAGTAGTACATTTTTGTTCTTCTGTTTATGTTTTCCTACCTCTCCAAAACAGAGAATGTCTGTCCTTATAAATATATGACTTTAGGGAATATAAAGAGGGCATTTCTTCTTTCTATATCCCAATTAAACAAGATAATTTCTTCCTTTCAAATGTAGGTGGTGTTCTACCTGTTACAGATTACCATGATATAATGCTGAGCTAAGAATAAACAATATATTCATCTCACTTATCCTCTAAAAGTAGTCAGAATCACTAGATAAAATTACACGGTACATTTATGAGGTTTTAATCCTGTGATTTCTAAATTAAAGCATTAATCGAATAGAAGAGACTATATCATCATTGCAGCACTGTGCAGTTTAAGTGACACCTAGGAAAGCTTAAATGGTCTCCTTTTGAAAACATCTTGAACTGTAAAAAGACCTAAAAATCATTCACTGCTGAAATTATCACTTTTTTTTTTCCCATAAAATTCCTACTAGACTGGAAGATGAGATAAAAGTAAATACCACAGGATATCTGCTGCAAATAAATAATAAATAAATACAAGCCTAGAGGCATAGAATAACAGAATCATAGAACGGCCTGGGTTGAAAAGGACCATAACAATCATTGAGTTTCAACCCCCCTGCTATGTGTAGGGTTGCCAACCACCAGACCAGGCTGTCCAGAGCCACGTCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAACCTCCTTGGCCAACCTGTTCCAGTGAATTACCACCCTCAGAGTGAAAAACTTCCTCCTAATATCTAACCTAAACCTCTCCTGTCTTAGTTTAAAACCATTCCCCCTTGTCCAATCACTATGCACCCTTGTGAACAACCTTTCCCCCTCCTGTTTATCCACTCCCTTCAAGTACTGGAAGGCCACAGTGAAGTCTTCCCACAGCTTTCTCTCCTCCAAGCTAAACAAGCCCAGTTCCCTCAACCTTTCCTCATAGGAGAGCTGCTCCAGCCCTCTGATCATCTTAGTGGCCCTCCTCTGGACCCACTCCAAGAGCTCCATGTCCTTTCTGTGGTGGGGGCCCCAGGCCTGGATGCAGTACTGCAGATGGGGCCTCACAAGAGCTGAGTGGAGGGGCACAATCACCTCCCTCTCCCTGCTGGCCACCTCTTTTTAATGCAGCCCAGAACACAGTTGGCCTTCCGGGCTGCAAGCGCACACTGCTGGCTCATGTCCAGCTTCTCATCTACCAGAACCCCCCAAGTCCTTCTCCACAGGGTTGTTCTCAAGATCTTCCGTCAGTTTGTATAAATACCTGGGATTGCCCCGACCCGAGTGCAGCACCCTGCACTTGGCCTTACTGAACCTCATTAGGTTCCTATCGGCCCGCTTCTTCAGCCTGTCCAGGTCCCTCTGGATGGCTTCCTTTCCCTCCAGTGTATTGACTGCACCACTCAGCTTGGTGTTATCTGCAAATGCGTATTCCAAATGACTCAATTCCGGCAGCTACCGGAGGTGACAAGAGTATTGCAGAGAAAAAGCTGAAACTGCTGGATGCTGAGTATTTTTTGAGATGTGATGAAAATCGAAAGCAGAAACAGTTGCTCTAAAAACCCAGCAGGGTAAAAAAGAGAAATAAAAAAATGGTATCAACATAACTGTCACTTTGGTATTTGTATTTATCTTGGCATACGATTATCACTCAGCACTTTGTAAATGCTGGAATTACAAGAGATATTAATATGATTAAACCCAAATTTACATACTCTATTCATTATTATGGGTTAAGATGAATATACACATACATATGTATTTTAATACGCAGCTCTTCATGTAGATAACAAAGGATTTTGTTTGGTATGCATGTTTGTTTGGTAGCATTCAAAAACAGATGTATTAAAAGCACCAATTTAAAATAAATTAAAAACTGTATTTCTTGAAATATAAAACAAACATTAAACTAAAACATTGCTAGTAAGGAATCTGAATTTATGAAGCTGAGAATCACAATATGCGCCCAAACTACATATCTGAAAAAAGTGCATTTTTCCCCTCAG
Seq C2 exon
GAAGCTGATGCATTGGCTGATGCTGAGGAAAGATGTGACCAGCTCATCAAAACCAAAATCCAGCTGGAAGCCAAAGTAAAGGAGGTGACAGAACGGGCTGAGGATGAGGAGGAAATTAATGCTGAACTGACAGCCAAGAAGAGAAAACTGGAGGATGAATGTTCAGAACTGAAGAAAGACATAGATGACCTGGAGTTAACATTGGCCAAAGTTGAGAAGGAAAAGCATGCCACTGAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023705:ENSGALT00000001424:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.383
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.4=62.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(40.6=100),PF0157614=Myosin_tail_1=PU(30.1=49.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]