BtaINT0097444 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30238179-30238995:-
Coord C1 exon
chr19:30238740-30238995
Coord A exon
chr19:30238422-30238739
Coord C2 exon
chr19:30238179-30238421
Length
318 bp
Sequences
Splice sites
5' ss Seq
GCTGTATGT
5' ss Score
5.1
3' ss Seq
TCTTTTTTTTTTTTTTTAAGGAA
3' ss Score
11.15
Exon sequences
Seq C1 exon
GGAGTCCATCTTCTGCATCCAGTACAACATCCGAGCCTTCATGAACGTCAAGCACTGGCCTTGGATGAAACTCTTTTTCAAAATCAAGCCCCTTCTCAAGAGTGCAGAGACGGAGAAGGAGATGGCCACCATGAAGGAAGAGTTCCAGAAAACCAAGGATGAACTGGCCAAGTCAGAGGCCAAAAGGAAGGAACTGGAAGAAAAACTGGTGACTCTAGTACAAGAGAAGAACGACCTGCAGCTACAAGTACAAGCT
Seq A exon
GTATGTGTCTAGGAATTTAAGGTTTTTTCTCCTAGATTTGATTATCTAGGAAAACTGGATTTTAGGTGGGATTTTTGCTTTTTACTGGGTATGTTTCATAAAGGATTCCATTTATAACAAAATACTTTGTTATTGTTCAGTTGCTGAGTTGTGTCAGACTCTCTGCGACCCCATGGATTGCAACATGCCAGGCTCCTCTGTCCTTTACTATCTCCTGGAGTTTGTTCAAATTCACTCATTCAACAAAATACTGGAATGTCACCGACTTTATCTTTAAACCATTAAAGGAAATCATGATTCTTTTTTTTTTTTTTTAAG
Seq C2 exon
GAAAGTGAAAACCTGTTGGATGCAGAGGAAAGATGTGATCAGCTGATCAAAGCCAAGTTCCAGCTGGAGGCTAAGATCAAGGAAGTGACAGAGAGAGCTGAGGATGAGGAAGAGATGAATGCTGAGCTGACGGCCAAGAAGAGGAAACTGGAGGACGAATGTTCAGAACTGAAGAAAGACATAGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAACATGCCACAGAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803:ENSBTAT00000001120:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.7=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(41.9=100),PF0157614=Myosin_tail_1=PU(28.6=46.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGCCTTGGATGAAACT
R:
CCAGTTTCCTCTTCTTGGCCG
Band lengths:
356-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development